PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 226aa    MW: 24281.9 Da    PI: 4.8401
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004940.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     + +WT+eEde l +av+++G  +W++Ia  +  gR +k+c++rw ++l
       Do004940.1 15 KTPWTAEEDEALRRAVREHGRQNWAAIAGDVAGGRGAKSCRLRWCQHL 62
                     579****************************99***********9986 PP

2Myb_DNA-binding49.68.9e-1670111346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T+eEd ++v+  + +G++ W+tIar++  gR+++ +k+rw++
       Do004940.1  70 PFTPEEDARIVEQQRVHGNK-WATIARYLH-GRSDNAVKNRWNS 111
                      89******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.6661066IPR017930Myb domain
SuperFamilySSF466891.95E-2913109IPR009057Homeodomain-like
SMARTSM007176.6E-161464IPR001005SANT/Myb domain
PfamPF002493.2E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-211769IPR009057Homeodomain-like
CDDcd001671.01E-131762No hitNo description
SMARTSM007174.0E-1267115IPR001005SANT/Myb domain
PROSITE profilePS5129418.14469117IPR017930Myb domain
PfamPF002495.2E-1370111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2070115IPR009057Homeodomain-like
CDDcd001671.06E-970110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAAECGEAGK ADCKKTPWTA EEDEALRRAV REHGRQNWAA IAGDVAGGRG AKSCRLRWCQ  60
HLAPELDSRP FTPEEDARIV EQQRVHGNKW ATIARYLHGR SDNAVKNRWN SALRKMQPQG  120
NPVAAAAAAA APQEEEADDA TEDQAAAAAA PACLDLFPLR AGEMREQAAA ADRFGVRDEE  180
EEGDDVASIG LTLGSPGLSE AELALSLRPV RPSSDRGDAA SFRLCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2691151106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974756.11e-105transcription factor MYB1
TrEMBLA0A1E5V3891e-160A0A1E5V389_9POAL; Transcription factor MYB44
STRINGSi015776m1e-104(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.16e-40myb domain protein 77