PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do004940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB | ||||||||
Protein Properties | Length: 226aa MW: 24281.9 Da PI: 4.8401 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.5e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+eEde l +av+++G +W++Ia + gR +k+c++rw ++l Do004940.1 15 KTPWTAEEDEALRRAVREHGRQNWAAIAGDVAGGRGAKSCRLRWCQHL 62 579****************************99***********9986 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 8.9e-16 | 70 | 111 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eEd ++v+ + +G++ W+tIar++ gR+++ +k+rw++ Do004940.1 70 PFTPEEDARIVEQQRVHGNK-WATIARYLH-GRSDNAVKNRWNS 111 89******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.666 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.95E-29 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-16 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-21 | 17 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.01E-13 | 17 | 62 | No hit | No description |
SMART | SM00717 | 4.0E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.144 | 69 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.2E-13 | 70 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 70 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-9 | 70 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MAAECGEAGK ADCKKTPWTA EEDEALRRAV REHGRQNWAA IAGDVAGGRG AKSCRLRWCQ 60 HLAPELDSRP FTPEEDARIV EQQRVHGNKW ATIARYLHGR SDNAVKNRWN SALRKMQPQG 120 NPVAAAAAAA APQEEEADDA TEDQAAAAAA PACLDLFPLR AGEMREQAAA ADRFGVRDEE 180 EEGDDVASIG LTLGSPGLSE AELALSLRPV RPSSDRGDAA SFRLCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 9 | 115 | 1 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do004940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974756.1 | 1e-105 | transcription factor MYB1 | ||||
TrEMBL | A0A1E5V389 | 1e-160 | A0A1E5V389_9POAL; Transcription factor MYB44 | ||||
STRING | Si015776m | 1e-104 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 6e-40 | myb domain protein 77 |