PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do004892.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 26891.3 Da PI: 6.3721 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.4 | 3.4e-05 | 74 | 97 | 3 | 26 |
HHHHHHHHHHHHHHHHHHHHHHCT CS HLH 3 rahnerErrRRdriNsafeeLrel 26 r+h e+E+rRR+ri+s +++Lr + Do004892.1 74 RNHREAEKRRRERIKSHLDRLRNI 97 78********************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.91E-8 | 74 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MFPAAEVSAL AAGAGAAAGC QAEGGVLPML PPFFMGSIWP AVGAGPTGAA DSEEDEAAAA 60 AAAAAHDRAL AASRNHREAE KRRRERIKSH LDRLRNIDKA SLLAKAVERV RDLKQRVAGV 120 GEAAPAHLFP TEHDEIVVLA SGGAVFEASV CCDDRSDLLP ELIETLRALR LRTLRAEMAT 180 LGGRVRNVLV LARDVDGGGV VGDDDGYGRA NSAGSVEGNG SGGDFLKEAL RALVERPGAG 240 GGDRPKRRRV SDTNMQASA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 245 | 249 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do004892.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727966 | 1e-130 | KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981312.1 | 1e-114 | transcription factor bHLH106-like | ||||
Swissprot | O80674 | 1e-41 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A1E5UVK6 | 1e-180 | A0A1E5UVK6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J24868.1.p | 1e-100 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9578 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 2e-21 | bHLH family protein |
Publications ? help Back to Top | |||
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