PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004879.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 272aa    MW: 28337.7 Da    PI: 4.2931
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004879.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-183990156
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  Do004879.1 39 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 90
                5799******.**********843...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.26E-293998No hitNo description
SMARTSM003803.1E-3240103IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-214097IPR016177DNA-binding domain
PfamPF008479.6E-114089IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-294097IPR001471AP2/ERF domain
PROSITE profilePS5103221.5624097IPR001471AP2/ERF domain
PRINTSPR003671.5E-84152IPR001471AP2/ERF domain
PRINTSPR003671.5E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MNFSSYFFSS SPSSADKKSS SSKQRRQQAA QPQPDANTTR YLGVRRRPWG RYAAEIRDPA  60
TKERHWLGTF DTAEEAAVAY DRAARSLRGA RARTNFAYPD LPPGSSITPY LSPDLTSGDN  120
AGQLLQPFYA DPAASLPQAP AANGGGAAEY GACGGDYAAY GYSADDMSAL MEDLAIPDDL  180
PADDYSIGAG AAMDLSSMYG GGGANNASAG GSGGGWCDAS ELSAYGASAA ASHGVYFEEG  240
YVHSPLFSPM PAVDDACADG FQLGGSSSSY YY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-184196662ATERF1
3gcc_A6e-184196662ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004879.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9741060.0EU974106.1 Zea mays clone 439808 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975472.11e-136ethylene-responsive transcription factor LEP
TrEMBLA0A1E5WHR50.0A0A1E5WHR5_9POAL; Uncharacterized protein
STRINGPavir.Gb01913.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.14e-24ERF family protein