PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do004835.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 317aa MW: 33888.1 Da PI: 6.4059 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.9 | 9.6e-38 | 35 | 89 | 6 | 60 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Do004835.1 35 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 89 68***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 21 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.854 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.8E-32 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 37 | 73 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 317 aa Download sequence Send to blast |
MLSSHCDSVL PYAAAGRRAV LLDHRRYRPN VEVAPNCPRC DSPNTKFCYY NNYSLSQPRY 60 FCKGCRRYWT KGGSLRNVPV GGGCRKNRRG KPVRAVPVVD AVAAGAGGAA AAAFSHRSSS 120 FPAGTLRPDL LLDGMVGSPA GLCHPMDNAD KPAAVVEGST IDLALLYAKF LNHQPAAVEQ 180 CTILPESLDT LSGSSSSDMS PNVPPPPDHH PFARQNGFRE LSAPASADPR LPAPQQCPDV 240 RSEVLGELSF SVDQSCYDSL GLPTDGDDLI LPSTWHTEAK YEPFDPLPED AMGLHGGDDV 300 WSSALACQGL EAALCRP |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do004835.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT087262 | 1e-106 | BT087262.1 Zea mays full-length cDNA clone ZM_BFb0021J09 mRNA, complete cds. | |||
GenBank | JX428477 | 1e-106 | JX428477.1 Zea mays subsp. mays clone pUT3073 DOF20 C2C2-DOF type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961942.1 | 1e-156 | dof zinc finger protein DOF1.8 | ||||
Refseq | XP_025808971.1 | 1e-156 | uncharacterized protein LOC112887095 | ||||
TrEMBL | A0A1E5WEJ3 | 0.0 | A0A1E5WEJ3_9POAL; Dof zinc finger protein DOF3.5 | ||||
STRING | Pavir.J05303.1.p | 1e-168 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2659 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G52440.1 | 6e-35 | Dof family protein |