PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004766.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 262aa    MW: 27919.2 Da    PI: 10.1078
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004766.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.1e-32184242159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Do004766.1 184 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 242
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-33169242IPR003657WRKY domain
SuperFamilySSF1182901.44E-28176243IPR003657WRKY domain
PROSITE profilePS5081129.356179244IPR003657WRKY domain
SMARTSM007749.8E-37184243IPR003657WRKY domain
PfamPF031064.3E-25185241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MFPSPGRAVV ALGHGQHTSS TAGAAMAAAA AATSSTPTIT FAFQPPPPPT SSLAHHGVLG  60
YSSLLLDHPP TATTSSSSSH APSSTIPPPT LHHLHAAHVS PPTRSSPPPH PWSTCDEGHD  120
QGQGRQRGKG AAVSEGLAAA GHNGAAALGV GAVRMKKAGG GGKARRKVRE PRFCFKTMSD  180
VDVLDDGYKW RKYGQKVVKN TQHPRSYYRC TQDNCRVKKR VERLAEDPRM VITTYEGRHV  240
HSPSRDEDDD AARANAEMSF IW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-25175241874Probable WRKY transcription factor 4
2lex_A1e-25175241874Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004766.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369001e-157BT036900.1 Zea mays full-length cDNA clone ZM_BFb0146L21 mRNA, complete cds.
GenBankEU9636461e-157EU963646.1 Zea mays clone 265112 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818604.11e-134probable WRKY transcription factor 13
TrEMBLA0A1E5WH290.0A0A1E5WH29_9POAL; Putative WRKY transcription factor 13
STRINGGRMZM2G151444_P011e-109(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113838130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.13e-47WRKY DNA-binding protein 13