PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004759.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GeBP
Protein Properties Length: 368aa    MW: 40184.1 Da    PI: 6.0922
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004759.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.74.9e-3579178297
      DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiW 96 
                 lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++++sksqlveK+rrLK+K++++v++ ++sg  +sf+++h+q ife+++ iW
  Do004759.1  79 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDMRRRLQLDFSKSQLVEKLRRLKRKYRNCVSRlRESGATFSFRSPHEQAIFEIARNIW 177
                 79************************99877778***************************************8999********************** PP

      DUF573  97 g 97 
                 +
  Do004759.1 178 R 178
                 8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.2E-3180177IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MPPTGDDPSA AAGVSFPDAD GGGDSEDGDF ADAHLLDPTD PNLPKPTTSS ATGLPHAVPA  60
GGSGGGPVTS GNGGERRPLF QRLWTEEDEI VILRGFAEFT AARGTAFASH QYDTDPFYED  120
MRRRLQLDFS KSQLVEKLRR LKRKYRNCVS RLRESGATFS FRSPHEQAIF EIARNIWRPT  180
NKHGRDPSAD SDDEDGAANT SPNGEVKSPS SGRQRRRRRA TDFAAANDTA PATNMVQPPQ  240
PVQLPVSVPV KMEDSLPALP QTPMPVTVTM DGSEQLRLPV MSPQSGVSDA EKSCLTPLLK  300
EMMRAVINVR TNPFGAKLPD PPLGLPMEGE KWRKQRILEL EVYLKRIELL KDQAKATLEE  360
LKSSTTGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004759.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0416520.0BT041652.1 Zea mays full-length cDNA clone ZM_BFb0025B02 mRNA, complete cds.
GenBankEU9699720.0EU969972.1 Zea mays clone 337956 hypothetical protein mRNA, complete cds.
GenBankJX4284550.0JX428455.1 Zea mays subsp. mays clone pUT3049 GBP12 GeBP type transcription factor mRNA, partial cds.
GenBankKJ7267970.0KJ726797.1 Zea mays clone pUT2289 GeBP transcription factor (GBP12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799483.10.0probable transcription factor At3g04930
TrEMBLA0A1E5UXC00.0A0A1E5UXC0_9POAL; Uncharacterized protein
STRINGPavir.Bb03462.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.16e-46DNA-binding storekeeper protein-related transcriptional regulator