PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do004748.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 316aa MW: 33472.6 Da PI: 10.5579 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.6e-15 | 125 | 169 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky Do004748.1 125 PWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 169 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.68 | 3 | 18 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 20.171 | 118 | 174 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.29E-18 | 119 | 175 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.1E-19 | 121 | 173 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.4E-11 | 122 | 168 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-11 | 122 | 172 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.64E-10 | 125 | 170 | No hit | No description |
Pfam | PF00249 | 2.6E-12 | 125 | 169 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 316 aa Download sequence Send to blast |
MARKCSSCGN NGHNSRTCSG HGGRVLKENG GGGGGGVRLF GVQLHVGSSS SPMKKCFSME 60 CLSSEAPPAY YAAAALNLAA NSSSPSVSSS SSLVSVEETA EKMTTNGYLS DGLMGRAQER 120 KKGVPWTEDE HRRFLAGLEK LGKGDWRGIS RHFVTTRTPT QVASHAQKYF LRQSSLTQKK 180 RRSSLFDVVE NADRAASASE RRLRLKDAAT TSSAPDTELP PLSLGISRPA KPERVLPPSL 240 SMSSLLPRCS AAMSTSTSPG LAAAPQRPSS SLTPSTKPHQ ASLQQAPDLE LKISTADHQT 300 AGSSPRTPFF GTIRVT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00565 | DAP | Transfer from AT5G56840 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do004748.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU967099 | 1e-148 | EU967099.1 Zea mays clone 299455 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818314.1 | 1e-131 | transcription factor MYBS3-like | ||||
Swissprot | Q7XC57 | 2e-48 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A1E5VFZ3 | 0.0 | A0A1E5VFZ3_9POAL; Transcription factor DIVARICATA | ||||
STRING | Pavir.Ea00361.1.p | 1e-127 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4231 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56840.1 | 1e-49 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|