PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004691.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 412aa    MW: 45002.1 Da    PI: 5.4979
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004691.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.000313614001054
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +rRR+ri +  + Lr+++P      +k  +  ++L +A+ Y+++L
  Do004691.1 361 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLQYL 400
                 9******************97...333..3458999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.826351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-6361407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-6361408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00184361405No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MVWKAAAQTR FRVFKHENGI AVRVIACFQP PQNCQVMRKQ AKCRVLPPSP QARDVASLCS  60
PFAAEETFCF SYLFLFAMGI LMLNLFLVIS GNFFGGGFFM GDKVNPWCQW PNPPWKFNTE  120
SSVGNLYPPD VGLVGTNSVA LPTYLNTVAA PVQFFTASFT DRPLPMAPRF VTTLAPSLEL  180
SALYPSHKRS LVFYRENHTP IAAPLVSKWT LDPVPELQGS NETNITDVGA EETEGIHENT  240
DEINALLDSD SDEGYEKVQE LNIIRRPSPA ENDTLSVESV ASAGASAGSG RPAKKRRLNS  300
GTDKSVVDTA SSARLDHSIE QKLLVNDCDA QSCCIGEVES SHKFALGEGE AADGDNPDDQ  360
KRRRERIQET VAALRKIVPG GIAKDATAVL DEAICYLQYL KVKVKTLGAV SL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004691.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984140.10.0transcription factor bHLH144
TrEMBLA0A1E5UKP60.0A0A1E5UKP6_9POAL; Uncharacterized protein
STRINGSi039339m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100311820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.15e-10bHLH family protein