PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004618.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 524aa    MW: 60441.1 Da    PI: 9.9745
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004618.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-073356126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                ykt+lC  ++r G C++ d+C+FaHg
  Do004618.1 33 YKTKLCALWQR-GGCSR-DTCSFAHG 56
                9**********.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-112762IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.5823258IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-53356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MRDRSVDREF PSRERGDRPP PGMLGPPRRG PAYKTKLCAL WQRGGCSRDT CSFAHGHAEL  60
RRFPGSRTSF PPRAGIHSPF SCPPFSSRSV FLQVIYPSFH KTCSILTSGR RDYRGDDFRD  120
RFDRRRSPHR RHSPDRDSRG HRPLHDRRPI SQERESSYSR SPSRKSERRH EKKPDDGETN  180
SSRSLSVSDN NDDRKKETLV TGDDKEDQEI QLKQIRHDME LLREDKSHLE IILDDKNAEV  240
RKISSRVNDL DLQLRKEKEE CHRMTSKIKK FLKAHTRFLK AQEELKRSQA RFERLGDLLA  300
SDILKRGANE EVSSININED PNGPYERSPN AATAKKRSIP YSTSEEAKAV KKRRDRDAEF  360
DKPSKGTEPT KSLYLKKKLW EDEKDKIGNV VSSANTDKVK DSPVKHVLPS TGMAAHALDD  420
LFEAVELEDR HDSINASIEN DAGDETRSPA MPPQPPSVVN AYEQVTKLAS YILRRKDKIL  480
LISFCISSEK CAHVLFYFFP SMRVMMKKST WNKWNVEMVE MILE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334353KKRSIPYSTSEEAKAVKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004618.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402400.0BT040240.1 Zea mays full-length cDNA clone ZM_BFc0072P19 mRNA, complete cds.
GenBankBT0559590.0BT055959.1 Zea mays full-length cDNA clone ZM_BFc0069F17 mRNA, complete cds.
GenBankEU9620390.0EU962039.1 Zea mays clone 239776 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815373.10.0zinc finger CCCH domain-containing protein 13-like isoform X2
SwissprotQ6H7U20.0C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLA0A1E5UZJ20.0A0A1E5UZJ2_9POAL; Zinc finger CCCH domain-containing protein 13
STRINGSi017193m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38822943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.15e-20C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]