PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do004603.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | C2H2 | ||||||||
Protein Properties | Length: 207aa MW: 21415.3 Da PI: 7.739 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7e-05 | 129 | 149 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 Cp Cgk F+++ H+++H Do004603.1 129 CPFCGKEFRNHKAVCGHMKVH 149 *******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.284 | 127 | 154 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0034 | 127 | 149 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 129 | 149 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MEGSSEDRCR SRLLADLYGS DEPEEGELVV PGPGYHSDAD TEEYYNNHRD CSSDSDETIS 60 DSVPAANYGG ASTSSSAPAN NNNNNGGGGA SSAAANNCAS ASTSSAAANN NKGGGGGAAC 120 SSAAPVLACP FCGKEFRNHK AVCGHMKVHR EQQGVGKGKG IKMGRLRQRP QRPPRCRPRR 180 LRAVLVSISV SESWPPTPPT SVGHGAQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do004603.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5WHJ1 | 1e-149 | A0A1E5WHJ1_9POAL; Uncharacterized protein | ||||
STRING | Sb03g029910.1 | 2e-35 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7612 | 11 | 36 |