PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004602.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 491aa    MW: 49797.9 Da    PI: 6.501
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004602.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-05363385123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ Cg++F+   +L  H+r+H
  Do004602.1 363 HVCKVCGEVFTAGVQLGGHMRKH 385
                 79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.7104127IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.536311338IPR007087Zinc finger, C2H2
SMARTSM003550.74311333IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.95E-6311385No hitNo description
PfamPF139120.0013311334IPR007087Zinc finger, C2H2
PROSITE patternPS000280313333IPR007087Zinc finger, C2H2
PfamPF139121.8E-6362386IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.408363390IPR007087Zinc finger, C2H2
SMARTSM003550.045363385IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280365385IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MAGGSSEDRW RRPSHCNGDL RDDEPEEGEF VPGDHSDMDT EEYYNRHCPL SNSDETVSDS  60
NAACSVVPAS YGEVTSAPSV VTANNNNGGN ASSSSVAAPA PAALACPVCG KAPFRSLKAV  120
CGHMKVHKGH RGVAVVGVWG GTGKQGCSGL GARAATPNAE SDQSMAIVVA EPMIVLQPMP  180
LAFATPNLSS SVSMASATPN LSSVPVASAT PNLSPVPVAS TITDVSGQSS SAQPMPNDDV  240
MDTVVAGGAN PPSEAVVHLH AAPPPAAGEQ APSIHQQLPM APPPAVERAP PVHQPPIAPR  300
PATSRQNPNG YTCKQCNMWF QTHQGLGGHK AGHSNKEAAA AAAGMLEDGA APCHRNAKPA  360
KAHVCKVCGE VFTAGVQLGG HMRKHYTGPP IVPNKKPRLA IAIEPHLPPP ALTLALSVNA  420
VEASPAPAVE AAPQPGPAPA VERAPEPAPR PAAAGRVLLF GIDIGMAAQK PAAQEGPSAT  480
EGSAASTGGE Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004602.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5WHM70.0A0A1E5WHM7_9POAL; Uncharacterized protein
STRINGSi004298m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.19e-14C2H2 family protein