PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do004562.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 23794.8 Da PI: 6.426 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.6 | 6e-10 | 62 | 102 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri ++f Lr+l+P K++ +++Le+A++Y+k L Do004562.1 62 ARERRHRISDRFRVLRSLVPGG-----SKMDTVSMLEQAIHYVKFL 102 699*****************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.313 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-14 | 58 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.83E-14 | 59 | 107 | No hit | No description |
SMART | SM00353 | 8.9E-13 | 59 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-12 | 59 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-7 | 62 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MDPYHYQAMY DPRGYPVHPQ PYLHYPAASG TLLSDSRVRG GGGGARRRPG SKLSTDPQSV 60 AARERRHRIS DRFRVLRSLV PGGSKMDTVS MLEQAIHYVK FLKTQVSLHQ AALMQHEEGC 120 PADLAAAYSA LAGAGEVTLA SACRAAVACE EVVHQLQVPL QQVVSYDVAA PHQLHGLDPG 180 QMSGGHELPP LPSCVFVEET AAACYSVCDL DEGDTDLPGS Y |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that seems to regulate organogenesis in postembryonic development. Involved in the regulation of shoot branching by controlling axillary meristem initiation. Functions in association with LAX2 to regulate the process of AM formation. Possesses transactivation activity in yeast (PubMed:21963665). {ECO:0000269|PubMed:13130077, ECO:0000269|PubMed:21963665}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do004562.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY683001 | 1e-117 | AY683001.1 Zea mays cultivar B73 barren stalk1 (BA1) gene, complete cds. | |||
GenBank | AY683002 | 1e-117 | AY683002.1 Zea mays cultivar OH43 barren stalk1 (BA1) mRNA, complete cds. | |||
GenBank | BT062649 | 1e-117 | BT062649.1 Zea mays full-length cDNA clone ZM_BFb0328D03 mRNA, complete cds. | |||
GenBank | EU975389 | 1e-117 | EU975389.1 Zea mays clone 489377 mRNA sequence. | |||
GenBank | EU975539 | 1e-117 | EU975539.1 Zea mays clone 492064 mRNA sequence. | |||
GenBank | KJ726888 | 1e-117 | KJ726888.1 Zea mays clone pUT3430 bHLH transcription factor (bHLH67) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819500.1 | 1e-107 | transcription factor LAX PANICLE 1-like | ||||
Swissprot | Q7XAQ6 | 2e-61 | LAX1_ORYSJ; Transcription factor LAX PANICLE 1 | ||||
TrEMBL | A0A1E5UKK3 | 1e-159 | A0A1E5UKK3_9POAL; Transcription factor LAX PANICLE | ||||
STRING | Pavir.J06869.1.p | 1e-104 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8553 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G01310.1 | 2e-26 | APRATAXIN-like |