PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004543.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 356aa    MW: 37665.1 Da    PI: 4.9537
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004543.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.73e-18115165155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr++  +g+++AeIrdp++   rkr++lg+f+taeeAa+ ++  +++l+g
  Do004543.1 115 PSYRGVRRRA-WGKFAAEIRDPYQ---RKRVWLGTFDTAEEAARIYDSEARRLRG 165
                 57*****777.**********876...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.63E-28115175No hitNo description
PfamPF008477.5E-11115165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-28116174IPR001471AP2/ERF domain
SMARTSM003801.4E-32116179IPR001471AP2/ERF domain
PROSITE profilePS5103222.273116173IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-20116174IPR016177DNA-binding domain
PRINTSPR003674.8E-10117128IPR001471AP2/ERF domain
PRINTSPR003674.8E-10139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVKAAVHKAA AAAAAAMRQR KVKNESAEEP AAIRKLVRVF CEDRDATDSS GDEAADDGGA  60
PRGARKFVME IRVEEHRSSS PKVVMSAPAP AGRVAATGGG KRKAPVVPAA DVAEPSYRGV  120
RRRAWGKFAA EIRDPYQRKR VWLGTFDTAE EAARIYDSEA RRLRGPLAST NFPAAPPSPV  180
RVPPSPIRAA RNAVADLSSA DESTGVAHAI PAATRDGVPY SSARVADFSS AEESSDESQL  240
VSSPVSVLPE MPGETTAAAP LALKPTDAAD YTPAKKETSP FSADALLPPL DDMFPSIITP  300
FGDLLDGLDA PQLHHLVDDY DPALDLGNLP LWPGVDGSSF SDIGDDFFTA ERFPAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-171161731472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004543.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966735.11e-110ethylene-responsive transcription factor CRF1
TrEMBLA0A1E5W7990.0A0A1E5W799_9POAL; Uncharacterized protein
STRINGSi008428m1e-109(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-23ethylene responsive element binding factor 3