PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do004363.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | Dof | ||||||||
Protein Properties | Length: 213aa MW: 22635.2 Da PI: 9.7402 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 128.4 | 2.1e-40 | 37 | 96 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++al+cprCdstntkfCyynnys++qPryfCkaCrryWtkGG+lrnvPvGgg+rknk++ Do004363.1 37 QDQALNCPRCDSTNTKFCYYNNYSMTQPRYFCKACRRYWTKGGTLRNVPVGGGSRKNKQQ 96 7899******************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 35 | 95 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.8E-34 | 38 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.05 | 41 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 43 | 79 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MVASPPGEEA AAAARNIKAK QAWQQQAAGE RKPRPQQDQA LNCPRCDSTN TKFCYYNNYS 60 MTQPRYFCKA CRRYWTKGGT LRNVPVGGGS RKNKQQRASA ASSAPPASSS SSSGSKKVNN 120 ITQQLMMMPT AVSATTTTAD FSNVLPVLMS TGGGFELPTS DHHQVSLPFV PLSLSSDPDG 180 GSGAAPLFMD MLRGGFLDSN GLAXAANESA IWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do004363.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376388 | 9e-55 | AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18. | |||
GenBank | AM084360 | 9e-55 | AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980592.1 | 7e-88 | dof zinc finger protein PBF | ||||
Swissprot | O24463 | 9e-56 | PBF_MAIZE; Dof zinc finger protein PBF | ||||
TrEMBL | A0A1E5UPU9 | 1e-155 | A0A1E5UPU9_9POAL; Dof zinc finger protein PBF | ||||
STRING | Si026678m | 2e-87 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 7e-40 | Dof family protein |
Publications ? help Back to Top | |||
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