PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do004267.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

MYB_related

Protein Properties

Length: 1290aa MW: 140367 Da PI: 5.7847

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do004267.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.8	6.7e-10	446	488	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e++ + +++G++ +++I++ + ++t +c+++++k+ Do004267.1 446 PWTQEEKEIFMEMLAKFGKH-FSKISSFLT-HKTTADCVEFYYKH 488 8***************99.****9.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.64E-14	432	491	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.742	442	493	IPR017884	SANT domain
SMART	SM00717	7.8E-10	443	491	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-8	444	490	IPR009057	Homeodomain-like
Pfam	PF00249	8.4E-8	445	488	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	12.545	635	686	IPR017884	SANT domain
SMART	SM00717	2.2E-6	636	684	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.8E-9	639	686	IPR009057	Homeodomain-like
CDD	cd00167	7.35E-5	640	678	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1290 aa Download sequence Send to blast
LTANTGTDPT KDVPEADDKV FNNEFSIELD QLGDDHINSL ASILTDLLQH DDSCSGDSKG 60 ATSTSKLLLL KESISKEIEK AELEIDSLEG ELKSVNTEAG TAVEGSPTGI TYAENLSPSS 120 GTSKVPLSVE IYEMSNVMKE PGEIIASPKV PVAQDADIKG VDMMEIETAP VRNAKTVSSE 180 ESAVSPGVAD GPACAAADLS PLKASEGVGS QNGMDNDRLE TSPCHVNADS IKTEVSDDLP 240 VRQCSHHDHK HSLFGSVTSA NNDMAKVMNE SLFKSLPADT SRLDLLASSY LLSQRKNDLI 300 IRERLGVQKN RLRLKEQILT IKFKAYRHLW KEDLRLLSAK KQRSKSNKRI DQSNRMSHIG 360 SQRQRSSNRS RLAMPAGNLS SFSTPEMSDV ASKLFSEFQI KRCRNYLKMP ALIIDEKEKE 420 CSRFVSKNGL VDDPVLVEKE RVMINPWTQE EKEIFMEMLA KFGKHFSKIS SFLTHKTTAD 480 CVEFYYKHHK SDSFREVRKL LDLRQQQPTS NYLGAKSGKK WNPEANAASL DMLGVASVAA 540 AHGLEYANRV DKISAKSLIQ TAYGSNLPLH ERESVAADVL AGICGTLSPE GMGSCITSSA 600 DPGQKIMTRM EHVLAPEIDR SIDEEDTLSD QECEVDPVDW NDDEKSIFIE AMNSYGKDFA 660 RISSCVKSKS YEQCKVFFSK ARKSLGLDLI HQGAADVSMP TSDTNGGRSD NDEACAAEMD 720 SAPCSPRSCS KIEMDICPSG GPNSDIISKQ PEGNISNECD VVDVKTEEDE KKADKNCSII 780 DHKGVDEGTD QAACVPIDIN CPERTEKLQG TDDVVDQVNM HNNSSINSST EQALVAHSEV 840 RSSLQSIEVL KTNKSPVGIG TDASRMGECS PHALDNKLMK AGNPGFSGCI ASESCIIKDS 900 IRFANMTGAS TISPAFAPSY QHSAPTDMPP TKPKPPVTPL TPKDLMPVQF SSAVPDPTAI 960 RFDGITSITT PSFEDSGNRV SSALGAKDRS KYPAFKDPPG NQHDTLFRDI DGYTNHLTAE 1020 LPIFSERTSS PVSTSQTDRF TLTKFQNGRS SSLGLPNTSD GIQWARKHEE VLHGSLRPCS 1080 RNKSSEGDEQ QKRPGDVKLF GKILSHQSSL QSSGPSCNGS KSKPSSQNID ISSVRLLNNP 1140 RDRVVCSSRP GITPHLGLDE RTVRSYGHLD GTTTQPEPLL VMAKCQSLAG VPFYSAKNGT 1200 LGVFSDYQQP SMQPHQSDPK RLERFSDPQK RNGMELISGF QQPGKISRFG GAGILVSGVS 1260 DPVAALKAQY GPGSKVMGSD MDPWKDIGSR

Sequence ? help Back to Top

Protein Sequence Length: 1290 aa Download sequence Send to blast

LTANTGTDPT KDVPEADDKV FNNEFSIELD QLGDDHINSL ASILTDLLQH DDSCSGDSKG  60
ATSTSKLLLL KESISKEIEK AELEIDSLEG ELKSVNTEAG TAVEGSPTGI TYAENLSPSS  120
GTSKVPLSVE IYEMSNVMKE PGEIIASPKV PVAQDADIKG VDMMEIETAP VRNAKTVSSE  180
ESAVSPGVAD GPACAAADLS PLKASEGVGS QNGMDNDRLE TSPCHVNADS IKTEVSDDLP  240
VRQCSHHDHK HSLFGSVTSA NNDMAKVMNE SLFKSLPADT SRLDLLASSY LLSQRKNDLI  300
IRERLGVQKN RLRLKEQILT IKFKAYRHLW KEDLRLLSAK KQRSKSNKRI DQSNRMSHIG  360
SQRQRSSNRS RLAMPAGNLS SFSTPEMSDV ASKLFSEFQI KRCRNYLKMP ALIIDEKEKE  420
CSRFVSKNGL VDDPVLVEKE RVMINPWTQE EKEIFMEMLA KFGKHFSKIS SFLTHKTTAD  480
CVEFYYKHHK SDSFREVRKL LDLRQQQPTS NYLGAKSGKK WNPEANAASL DMLGVASVAA  540
AHGLEYANRV DKISAKSLIQ TAYGSNLPLH ERESVAADVL AGICGTLSPE GMGSCITSSA  600
DPGQKIMTRM EHVLAPEIDR SIDEEDTLSD QECEVDPVDW NDDEKSIFIE AMNSYGKDFA  660
RISSCVKSKS YEQCKVFFSK ARKSLGLDLI HQGAADVSMP TSDTNGGRSD NDEACAAEMD  720
SAPCSPRSCS KIEMDICPSG GPNSDIISKQ PEGNISNECD VVDVKTEEDE KKADKNCSII  780
DHKGVDEGTD QAACVPIDIN CPERTEKLQG TDDVVDQVNM HNNSSINSST EQALVAHSEV  840
RSSLQSIEVL KTNKSPVGIG TDASRMGECS PHALDNKLMK AGNPGFSGCI ASESCIIKDS  900
IRFANMTGAS TISPAFAPSY QHSAPTDMPP TKPKPPVTPL TPKDLMPVQF SSAVPDPTAI  960
RFDGITSITT PSFEDSGNRV SSALGAKDRS KYPAFKDPPG NQHDTLFRDI DGYTNHLTAE  1020
LPIFSERTSS PVSTSQTDRF TLTKFQNGRS SSLGLPNTSD GIQWARKHEE VLHGSLRPCS  1080
RNKSSEGDEQ QKRPGDVKLF GKILSHQSSL QSSGPSCNGS KSKPSSQNID ISSVRLLNNP  1140
RDRVVCSSRP GITPHLGLDE RTVRSYGHLD GTTTQPEPLL VMAKCQSLAG VPFYSAKNGT  1200
LGVFSDYQQP SMQPHQSDPK RLERFSDPQK RNGMELISGF QQPGKISRFG GAGILVSGVS  1260
DPVAALKAQY GPGSKVMGSD MDPWKDIGSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	7e-15	404	495	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	7e-15	404	495	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	339	345	KKQRSKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do004267.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960366.1	0.0	uncharacterized protein LOC101781442 isoform X1
Refseq	XP_004960367.1	0.0	uncharacterized protein LOC101781442 isoform X1
Refseq	XP_012700232.1	0.0	uncharacterized protein LOC101781442 isoform X1
TrEMBL	A0A1E5WL70	0.0	A0A1E5WL70_9POAL; Uncharacterized protein (Fragment)
STRING	Si020953m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-80	MYB family protein