PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004237.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 360aa    MW: 39370.9 Da    PI: 6.9347
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004237.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-131462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd  l+ ++ ++G g +W   ++++g++R++k+c++rw++yl
       Do004237.1 14 KGPWAPEEDAVLKAYIDEHGAGgNWIQLPHKIGLNRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding43.47.6e-1469111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T++Ed l+  +    G++ W+tIa+ ++ gRt++++k++w++
       Do004237.1  69 GSFTEDEDRLICSLYISIGSR-WATIAAQLP-GRTDNDIKNHWNT 111
                      78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.935962IPR017930Myb domain
SuperFamilySSF466899.77E-2612109IPR009057Homeodomain-like
SMARTSM007176.4E-101364IPR001005SANT/Myb domain
PfamPF002494.7E-121462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-231569IPR009057Homeodomain-like
CDDcd001672.33E-71662No hitNo description
PROSITE profilePS5129422.95263117IPR017930Myb domain
SMARTSM007176.1E-1267115IPR001005SANT/Myb domain
PfamPF002494.7E-1269111IPR001005SANT/Myb domain
CDDcd001678.23E-970113No hitNo description
Gene3DG3DSA:1.10.10.602.7E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGRAPCCDKA TVKKGPWAPE EDAVLKAYID EHGAGGNWIQ LPHKIGLNRC GKSCRLRWLN  60
YLRPNIRHGS FTEDEDRLIC SLYISIGSRW ATIAAQLPGR TDNDIKNHWN TKLKRRLLGG  120
GRRPRAETRL QLLTSPTWQH SSFASSALER MQMSMRLHRR HQQAGLDSPA AFTLYNYSNI  180
SAPLWPSPSP SPSPSPAASE SSEMRPRQLP GATSTGYSGL WSHMPTSFSY TGAGVQENMA  240
GTCTPPLSTS TGETITAAGV ESSSSTPTAS SASATFGSMD DELDMLLRQI QCFGDGHIGD  300
EAVDGIDRYY FRAMDHETVD GCFRAMDHEA VDGSVGSWSS CSTPGVDSVV FHDYVQGYNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004237.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632600.0BT063260.1 Zea mays full-length cDNA clone ZM_BFc0043P16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802913.10.0transcription factor MYB36-like
SwissprotQ9FKL22e-74MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A1E5VI960.0A0A1E5VI96_9POAL; Transcription factor MYB36
STRINGPavir.Aa03183.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132652632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-68myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]