PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004213.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 608aa    MW: 67526.8 Da    PI: 7.3273
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004213.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.2e-13430476147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT eE++ ++ + +++G g+Wk I++++  +Rt+ q+ s+ qky
       Do004213.1 430 RRAWTIEEHKAFLLGLQEFGRGNWKNISKHFVPTRTPVQISSHAQKY 476
                      679*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.372425481IPR017930Myb domain
SuperFamilySSF466891.36E-15428482IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-13429479IPR006447Myb domain, plants
SMARTSM007174.4E-10429479IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-11430476IPR009057Homeodomain-like
PfamPF002497.3E-11430476IPR001005SANT/Myb domain
CDDcd001671.54E-9432477No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MDPTKSATGE WSDFEINMVK SVIVGYNAKN SYAGDMNKKH IDIVNEIQAM FPMKEKHQLI  60
RLYVDLVVDI TQSDTGYGSY HFVAPSSDLV NHNFEIPVED PSMDNMDMLL GYQATETGAM  120
RVAQEAPRGQ PAPPMERLHP RFWTKAEHRN MGSSKTDRLA RRHKRSPPNG IGRSFAVCSC  180
SAMATGRTSL ASSINDVGLY DAEPWAQSNT SGQEGLTFTG GAYNPNHYGA SGQHTTMSNL  240
EQVQPPIFNH GRSVHVSNCS QFLKKFGTRQ RSSLQRSLEL QKALQQDGCC PVALTVGSSQ  300
DAYAFTGNSP PSSCGDSPRS GVVEHWHRVL TIKGYAHIWA RDQGCWLDKE MMLTMPQQEN  360
DGNGEHPYLP AVLGSDVMND HFGMPIVDPT MDNMKMLLGS LTDEMWTMKA TDEAPAPKAH  420
HHRSERHAPR RAWTIEEHKA FLLGLQEFGR GNWKNISKHF VPTRTPVQIS SHAQKYFHRL  480
ESHAMRQRFS INDVGLCGTK PLKLNNALGW EALTCAGGTY NPSHYGSGGQ LATMNNHAQV  540
WSPFLYHPSQ ASSRQMAAWT GRQQLGPSSS AAPAMEGAWI QSDTLSTGDQ QQGDFLPNVQ  600
WMNMGNMY
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004213.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966689.12e-87uncharacterized protein LOC101759880
TrEMBLA0A1E5W9Z51e-91A0A1E5W9Z5_9POAL; Uncharacterized protein
STRINGSi007889m9e-87(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-19MYB family protein