PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004168.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 422aa    MW: 46847.4 Da    PI: 7.3848
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004168.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.63e-12634735
        GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                t TplWR+gp  ++ LCnaCG ++r kg+
  Do004168.1  6 TGTPLWRNGPPDKPVLCNACGSRWRTKGS 34
                78********55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0022246IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-6640No hitNo description
PfamPF003204.5E-10634IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.0E-8634IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.50E-10833No hitNo description
PfamPF139193.0E-12263358IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MENAGTGTPL WRNGPPDKPV LCNACGSRWR TKGSLANYTP MHRKDDNDEP RVSKLKPPTS  60
KPKSQKKKPN HIIMENGPFS GQNFRKMGDA DPSNRSSSGS AVSYSESCAP YGAVDASEMT  120
GSAQSHGWES LVPSRKRSCV TRPKSSPVEK LAKDLNSIMH EEQLYYLSGS SEEDLLYHSE  180
THVGSFEIGS GSVLLRHPNS KALEEESEAS SIPADNKSYI TSESYSGSAL FVDHNGNKAT  240
VNLNAATARP KRLLLHAEDN ARRDKLHYEN QHILESIDSP LVSVDLEDII NYSNFVKYLT  300
KEDQQQLIKL LPPTDSLTPP KSMRSMFSSL QFSDAIDSYQ MLLGEGILDP SFSGNEGWKT  360
VKMLALTNLT KCKWLECYKQ QKEKEIKETG EVENISESKG FAKSTMKPRK RSHDTHIQSD  420
AG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004168.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670300.0BT067030.1 Zea mays full-length cDNA clone ZM_BFb0155L18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663440.10.0GATA transcription factor 26
RefseqXP_021319847.10.0GATA transcription factor 26
TrEMBLA0A1E5VJ330.0A0A1E5VJ33_9POAL; GATA transcription factor 26
STRINGGRMZM2G421212_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.35e-80GATA transcription factor 26