PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do004146.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

bHLH

Protein Properties

Length: 416aa MW: 43499.8 Da PI: 6.1731

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do004146.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57.2	2.9e-18	226	272	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L+el+P++ K +Ka+iL +A+eY+ksLq Do004146.1 226 VHNMSERRRRDRINEKMRALQELVPHC-----NKTDKASILDEAIEYLKSLQ 272 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.01E-18	217	276	No hit	No description
SuperFamily	SSF47459	1.06E-21	220	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.743	222	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-15	226	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-22	226	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-18	228	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MGIRNLGALG SKKWILAMDG GERPATSQKR PFHPDGELVE LLWQDGAVVA HSQAQRGFGG 60 GGGNTGASSV TGEPAAAWLP GTCGGGALGG DVYSQLWQSI AQADGRAGAG APARARPAAK 120 SGNSGAGSSR TAGEVGSSLC GSNLVAAALH LDDDIDDVAA LPPPPLDEPG AGAGASTSSG 180 WNGNALPKRS RDEFASRSED ADFDTIDETP ASRQPASKRR TRAAEVHNMS ERRRRDRINE 240 KMRALQELVP HCNKTDKASI LDEAIEYLKS LQMQVQIMWM STGMAPMMLP GAHQLMPPMG 300 MGLNSACMPP AAQFLSQMQR VPPFMSNPLT NQMPQISSAA TIAPNVTNQA QSNRMAQLRN 360 PFLHSNDAMT TPPQVPSLFS YGPQMAQENV IQELLAGTAA PALGAELPSS SDGTGT

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MGIRNLGALG SKKWILAMDG GERPATSQKR PFHPDGELVE LLWQDGAVVA HSQAQRGFGG  60
GGGNTGASSV TGEPAAAWLP GTCGGGALGG DVYSQLWQSI AQADGRAGAG APARARPAAK  120
SGNSGAGSSR TAGEVGSSLC GSNLVAAALH LDDDIDDVAA LPPPPLDEPG AGAGASTSSG  180
WNGNALPKRS RDEFASRSED ADFDTIDETP ASRQPASKRR TRAAEVHNMS ERRRRDRINE  240
KMRALQELVP HCNKTDKASI LDEAIEYLKS LQMQVQIMWM STGMAPMMLP GAHQLMPPMG  300
MGLNSACMPP AAQFLSQMQR VPPFMSNPLT NQMPQISSAA TIAPNVTNQA QSNRMAQLRN  360
PFLHSNDAMT TPPQVPSLFS YGPQMAQENV IQELLAGTAA PALGAELPSS SDGTGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	234	KRRTRAAEVHNMSERRRR
2	230	235	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do004146.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269\|PubMed:17485859, ECO:0000269\|PubMed:22984180}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004955437.1	0.0	transcription factor PIF4
Swissprot	Q10CH5	1e-103	PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBL	A0A1E5WMD7	0.0	A0A1E5WMD7_9POAL; Transcription factor PIF3
STRING	Pavir.Ba03888.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3174	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	2e-33	phytochrome interacting factor 3-like 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Todaka D, et al. Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52 [PMID:22984180]