PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004059.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 399aa    MW: 42218 Da    PI: 6.0578
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004059.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09260308355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Do004059.1 260 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 308
                 58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-15255316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-11255312No hitNo description
PROSITE profilePS5088815.65257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-15258312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-7260308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-11263313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDMNESGEKG MEGNASSAGA GIPVEWQTQF SAAAFACPPA HQQQQQHQGG MMDSAFASAG  60
LWASTSQAMA LSDGRGGGGG FLAPVPGFLP QGLGHFPVDS GFIERAARAS CFGGGGGMMG  120
AGAGFGAADQ NMNGVFSGSS EALLDHQRKD GNEKPEPELG RNGHDGVPSS EAAGGDCSSK  180
GTSDSKKRRR PNEVMGGDQV QSSNLPADSA NESVHSKDKG EESSPATTTG KSKGKGAKET  240
SESQKEDYIH VRARRGQATN SHSLAERLRR EKISERMKLL QDLVPGCSKV TGKAVMLDEI  300
INYVQSLQRQ VEVIINIPLI CQNLRNFQNI ELIFISQFLS MKLATVNPRL DLNIEGLLSK  360
DQMPHALNGG SFSDVAQMAY PSLGSQDLSI RPSQDGFQM
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004059.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7267900.0KJ726790.1 Zea mays clone pUT2275 bHLH transcription factor (bHLH86) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698809.10.0transcription factor bHLH49 isoform X2
TrEMBLA0A1E5WK740.0A0A1E5WK74_9POAL; Transcription factor bHLH49
STRINGSi029882m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-48bHLH family protein