PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do004023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-YC
Protein Properties Length: 563aa    MW: 62046.4 Da    PI: 5.1838
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do004023.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC67.72e-211882901100
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 q+  fw k+   ie  +df +h++P +r+kk++ a +   m+  ++P  l+kace+f+ e+++r+w+ a++ +r+ +  sdi++a+t+ + + fl  +v
  Do004023.1 188 QMVEFWGKKqeeIEAIEDFSEHAIPPSRLKKVVCAKKGKMMMRFDTPPSLTKACEIFVQEISFRAWMCAKSHQRKIILDSDISEAITSIESYGFLNYVV 286
                 6778997765679999*******************************************************************************9999 PP

       NF-YC  97 prde 100
                  +d+
  Do004023.1 287 HTDQ 290
                 8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.46E-13175282IPR009072Histone-fold
PfamPF001252.0E-7192273IPR007125Histone H2A/H2B/H3
Gene3DG3DSA:1.10.20.101.6E-14212286IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MATTTITPTP IVSGTIPHMT YTARGVGFFG NNISNNNFDT LGVVTSLQQV PSIALPDIPN  60
NGYMSTIAST DTYCAGNPST SNIVAQDGGV TFHCPYGQEQ DQGEESTVGH HQNVVHQRLD  120
AEVAATTNVS REDDNNNINW DEVDMTDDSL LAKFWEEVHL SRLKTKEMDH HVDTDTSSTT  180
PSPEFEQQMV EFWGKKQEEI EAIEDFSEHA IPPSRLKKVV CAKKGKMMMR FDTPPSLTKA  240
CEIFVQEISF RAWMCAKSHQ RKIILDSDIS EAITSIESYG FLNYVVHTDQ GEHNLAPRSK  300
PTKKCHLRLT NKPSASHMLP SDQYKRPQSI PQYAEYSPNI HNSSPLPPTN GYHMPLPFPC  360
IPQEPYPLMP TTITPPPILT ETIAPMTDMA TSQVPPRAQP NIPNTCYMGT IASTISSYSV  420
GYANTSNVGA QYGGEAFQYP HIPPSSLQSS PSFPVANNSG RIAIGTIELN HTKQKVAHIK  480
NAMPAHNTAN ATNGIDPKAT ISVDDGQHQH GSLVPEVVPT TNVSGDNKNI NWDEVDMADD  540
SLLIKFWEDV MMKEDPNTPR DSL
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo004023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684300.11e-141uncharacterized protein LOC111257969
TrEMBLA0A1E5V4T80.0A0A1E5V4T8_9POAL; Uncharacterized protein
STRINGPavir.Cb01904.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.18e-19nuclear factor Y, subunit C1