PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do004023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NF-YC | ||||||||
Protein Properties | Length: 563aa MW: 62046.4 Da PI: 5.1838 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 67.7 | 2e-21 | 188 | 290 | 1 | 100 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 q+ fw k+ ie +df +h++P +r+kk++ a + m+ ++P l+kace+f+ e+++r+w+ a++ +r+ + sdi++a+t+ + + fl +v Do004023.1 188 QMVEFWGKKqeeIEAIEDFSEHAIPPSRLKKVVCAKKGKMMMRFDTPPSLTKACEIFVQEISFRAWMCAKSHQRKIILDSDISEAITSIESYGFLNYVV 286 6778997765679999*******************************************************************************9999 PP NF-YC 97 prde 100 +d+ Do004023.1 287 HTDQ 290 8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.46E-13 | 175 | 282 | IPR009072 | Histone-fold |
Pfam | PF00125 | 2.0E-7 | 192 | 273 | IPR007125 | Histone H2A/H2B/H3 |
Gene3D | G3DSA:1.10.20.10 | 1.6E-14 | 212 | 286 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MATTTITPTP IVSGTIPHMT YTARGVGFFG NNISNNNFDT LGVVTSLQQV PSIALPDIPN 60 NGYMSTIAST DTYCAGNPST SNIVAQDGGV TFHCPYGQEQ DQGEESTVGH HQNVVHQRLD 120 AEVAATTNVS REDDNNNINW DEVDMTDDSL LAKFWEEVHL SRLKTKEMDH HVDTDTSSTT 180 PSPEFEQQMV EFWGKKQEEI EAIEDFSEHA IPPSRLKKVV CAKKGKMMMR FDTPPSLTKA 240 CEIFVQEISF RAWMCAKSHQ RKIILDSDIS EAITSIESYG FLNYVVHTDQ GEHNLAPRSK 300 PTKKCHLRLT NKPSASHMLP SDQYKRPQSI PQYAEYSPNI HNSSPLPPTN GYHMPLPFPC 360 IPQEPYPLMP TTITPPPILT ETIAPMTDMA TSQVPPRAQP NIPNTCYMGT IASTISSYSV 420 GYANTSNVGA QYGGEAFQYP HIPPSSLQSS PSFPVANNSG RIAIGTIELN HTKQKVAHIK 480 NAMPAHNTAN ATNGIDPKAT ISVDDGQHQH GSLVPEVVPT TNVSGDNKNI NWDEVDMADD 540 SLLIKFWEDV MMKEDPNTPR DSL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do004023.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022684300.1 | 1e-141 | uncharacterized protein LOC111257969 | ||||
TrEMBL | A0A1E5V4T8 | 0.0 | A0A1E5V4T8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb01904.1.p | 1e-150 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9174 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 8e-19 | nuclear factor Y, subunit C1 |