PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do004021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NF-YC | ||||||||
Protein Properties | Length: 278aa MW: 32170.3 Da PI: 7.3413 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 77.7 | 1.6e-24 | 110 | 208 | 4 | 99 |
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 fw+k+ ie + f ++++P++r+kk++ a++ m++ ++P +l+kace+f+ el++r+w+ a++ +r+ + sdia+a+++ + +dfl d+ ++ Do004021.1 110 EFWMKKqqeIEAIEYFDERDIPMTRVKKVICAEKGKMMMTFDTPSFLTKACEIFVQELSFRAWMCANSHHRNIILDSDIAEAIASIESYDFLNDVLHTH 208 799876567999999*******************************************************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 4.6E-8 | 129 | 192 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 6.86E-15 | 130 | 205 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.9E-19 | 131 | 205 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MDDPVSRDRL FKKAWMIPCK NSIKADPATG IRTYESILFV FLCLGKSFLT PPPIIDKQHS 60 LFDYDLLFHH IIVVEVHLSR PRNKEMDRPI YIRTLPRTPV PLAEQQMVDE FWMKKQQEIE 120 AIEYFDERDI PMTRVKKVIC AEKGKMMMTF DTPSFLTKAC EIFVQELSFR AWMCANSHHR 180 NIILDSDIAE AIASIESYDF LNDVLHTHQK EHNSTPHLKS ANKPHHIKLI DQPSASCQPP 240 SDQYPTPQFI PQSAGYSPSV RIPPPLPPTN MLIRCLYP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do004021.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008662484.1 | 5e-77 | uncharacterized protein LOC103640778 | ||||
TrEMBL | A0A1E5V4B7 | 0.0 | A0A1E5V4B7_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G052499_P01 | 2e-76 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9174 | 21 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 4e-19 | nuclear factor Y, subunit C1 |