PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do004006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | RAV | ||||||||
Protein Properties | Length: 395aa MW: 40982.5 Da PI: 9.5979 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.8 | 9.6e-12 | 83 | 131 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f + +Aa+a++ a+++++g Do004006.1 83 SRYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEADAARAYDVAAQRFRG 131 78****9888.8*********......44**********99*************98 PP | |||||||
2 | B3 | 95.8 | 2.8e-30 | 218 | 308 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ tpsdv+k++rlv+pk++ae+h g +++++ l +ed +g++W+++++y+++s++yv tkGW++Fvk++gL++gD+v F+ Do004006.1 218 FDKAVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGETKGVLLNFEDAEGKVWRFRYSYWNSSQSYVXTKGWSRFVKEKGLQAGDVVGFYX 308 89*******************************5566899*************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.12E-22 | 83 | 139 | No hit | No description |
Pfam | PF00847 | 9.8E-8 | 83 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-16 | 83 | 139 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.651 | 84 | 139 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-24 | 84 | 145 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.9E-19 | 84 | 139 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-37 | 210 | 335 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-28 | 216 | 309 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.56E-27 | 216 | 307 | No hit | No description |
PROSITE profile | PS50863 | 13.366 | 218 | 327 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.6E-27 | 218 | 308 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.8E-22 | 218 | 326 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MDSASSLVED TSGGGASTDK LKELAAAAAS DGGPLERMGS GASAVVDATE PGAEADSGSA 60 PGSGGVAAAV GMGVGVGGKL PSSRYKGVVP QPNGRWGAQI YERHQRVWLG TFAGEADAAR 120 AYDVAAQRFR GRDAVTNFRP LADANPDAAV ELRFLASRSK AEVXDMLRKH TYFDELAQNK 180 RAFAAAAAAP TTTALASAHS SLSSPSPAAA AAAREHLFDK AVTPSDVGKL NRLVIPKQHA 240 EKHFPLQLPS AGGETKGVLL NFEDAEGKVW RFRYSYWNSS QSYVXTKGWS RFVKEKGLQA 300 GDVVGFYXSA PAAGADSKLF IACKLRPIPA SPASPVEPSP APVAKAVRLF GVDLLTAPAT 360 AAAPAEAMAG CKRARDLAAP PQAAFKKQLV ELALV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-50 | 215 | 326 | 11 | 117 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do004006.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727870 | 0.0 | KJ727870.1 Zea mays clone pUT5962 AP2-EREBP transcription factor (EREB126) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020398137.1 | 0.0 | AP2/ERF and B3 domain-containing protein Os01g0693400 isoform X2 | ||||
Swissprot | Q8RZX9 | 0.0 | Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400 | ||||
TrEMBL | A0A1E5WKG3 | 0.0 | A0A1E5WKG3_9POAL; AP2/ERF and B3 domain-containing protein | ||||
STRING | Pavir.Eb02845.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 4e-94 | related to ABI3/VP1 1 |