PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003979.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | Dof | ||||||||
Protein Properties | Length: 341aa MW: 34804 Da PI: 8.994 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.3 | 3e-37 | 85 | 143 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e lkcprCdstntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+ Do003979.1 85 EPGLKCPRCDSTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 143 56789************************************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-39 | 68 | 142 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.789 | 88 | 142 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.0E-32 | 88 | 142 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 90 | 126 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MIFPPAFLDS SSWNDNQQQQ QQQAHHQVGA GGGGGDGNHD LLQPSIMGGA LPEGAGGGGG 60 AGQVGPAKPM SMAERARLAR IPLPEPGLKC PRCDSTNTKF CYFNNYSLSQ PRHFCRACRR 120 YWTRGGALRN VPVGGGYRRH AKRAKPKAAA AAGSAATSGG TASAATAALA PAGSTSSACA 180 TTNVPAHPGH AMLGGNLSML PPLLRLADFD AMSLGSSFSG MGKPSLDAAG AYSVGGGSGP 240 GGLEQWRVQQ MQSFPFLHAM DQGLLGPPLA MTMAPGMFQL GLDSGDGRGG GAGGEDGSGE 300 LHVMQAKREG YQARGMYGDH HLAAAGYASY TNNAATGNHL L |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00407 | DAP | Transfer from AT3G55370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003979.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807608.1 | 1e-159 | dof zinc finger protein DOF3.6-like isoform X1 | ||||
TrEMBL | A0A1E5V0E7 | 0.0 | A0A1E5V0E7_9POAL; Dof zinc finger protein DOF3.6 | ||||
STRING | Pavir.Ca00639.1.p | 1e-154 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 1e-44 | OBF-binding protein 3 |