PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003895.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family E2F/DP
Protein Properties Length: 348aa    MW: 37294.3 Da    PI: 6.0613
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003895.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.73.6e-27124210371
     E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Do003895.1 124 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEftdpnnnieapdpdnpnaqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 210
                 689*******...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.4E-45118216IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.8E-38122210IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.3E-25125210IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.08E-20125211IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.59E-21215285IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.71E-22217298No hitNo description
SMARTSM011385.6E-43217346IPR014889Transcription factor DP, C-terminal
PfamPF087817.9E-17246318IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MVSGVANPEG DGGAQAAQRP PPPVVARAAH GTPLVSGGAA QSASSGGSAG SPSSRSEQHA  60
PDGAGKGAAP GAAVAASAST PASESTFLRL NNLDINGDDA PSSQAPTSKK KKRGARAVGP  120
DKGNRGLRQF SMKVCEKVES KGRTTYNEVA DELVAEFTDP NNNIEAPDPD NPNAQQYDEK  180
NIRRRVYDAL NVLMAMDIIS KDKKEIQWKG LPRTSISDIE ELKTELVGLK GRIDKKSAYL  240
QELQDQTRPH ATVEVEISED MQLVHFDFNS TPFELHDDSY VLKEMQFCGR EQHDSTQEPI  300
SNGGESSSMA NIYWQQVQHP GQPNNGGVRL ASSPPIPGIL KGRVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-34116215193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003895.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9655130.0EU965513.1 Zea mays clone 286553 transcription factor Dp-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150052.20.0uncharacterized protein LOC100283679
SwissprotQ9FNY21e-110DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1E5WP870.0A0A1E5WP87_9POAL; Transcription factor-like protein DPB
STRINGGRMZM2G086072_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-106Transcription factor DP