PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003876.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GATA | ||||||||
Protein Properties | Length: 369aa MW: 38162.2 Da PI: 7.7166 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.8 | 6.1e-18 | 264 | 299 | 1 | 36 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 C++C + kTp+WR gp g+ktLCnaCG+++++ +l+ Do003876.1 264 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLM 299 ********************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.3E-16 | 258 | 308 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.4E-13 | 262 | 296 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.227 | 262 | 294 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-14 | 262 | 322 | No hit | No description |
CDD | cd00202 | 3.01E-13 | 263 | 310 | No hit | No description |
Pfam | PF00320 | 1.3E-15 | 264 | 299 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 264 | 289 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MASEWEMAMG VELGMGMGTY HGHHNASSIT AAPMSSHHSG GTSYSAAHHH HYYGMPPMGD 60 AMRVDELLDL STGAGAHEFF PTAAAAAATD NGHHHSAAMG EPSPTGNSSD HQTSILSFAD 120 EFYIPSEEAA ELEWLSKFVD DSYSDMPNYS SAAHAAMAAA AANAAGNGGG NSAGQDSCVT 180 AVPGRGARSK RSRATAAAAA AWHSLVPRPV SQSSPSSSSC SSSDFPSSNK PGRPNGANGS 240 RGKKSPGPGG AAGEVGMEGG VRRCTHCASE KTPQWRTGPL GPKTLCNACG VRFKSGRLMP 300 EYRPAASPTF VLTQHSNSHR KVMELRRQKE LILIRGSHRD AAAAAAAASA AVGSGGPRPE 360 LMFRDYGVC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003876.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068804 | 0.0 | BT068804.1 Zea mays full-length cDNA clone ZM_BFb0383N16 mRNA, complete cds. | |||
GenBank | BT087798 | 0.0 | BT087798.1 Zea mays full-length cDNA clone ZM_BFb0206G21 mRNA, complete cds. | |||
GenBank | EU956206 | 0.0 | EU956206.1 Zea mays clone 1559028 GATA transcription factor 9 mRNA, complete cds. | |||
GenBank | KJ726957 | 0.0 | KJ726957.1 Zea mays clone pUT3655 C2C2-GATA transcription factor (GATA28) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983678.1 | 0.0 | GATA transcription factor 2 | ||||
Swissprot | O49741 | 1e-59 | GATA2_ARATH; GATA transcription factor 2 | ||||
TrEMBL | A0A1E5UY69 | 0.0 | A0A1E5UY69_9POAL; GATA transcription factor | ||||
STRING | Si036273m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4621 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45050.1 | 7e-44 | GATA transcription factor 2 |
Publications ? help Back to Top | |||
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