PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do003868.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 2553aa MW: 291266 Da PI: 5.1238

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do003868.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.2	1.7e-49	2061	2191	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 lppGfrF P+dee++++yLk+kv+++++++ ++i evd++++ePw+Lp ++k++ekewyfF+k+d+ky+tg r+nra gyWkatgkdke+ Do003868.1 2061 LPPGFRFYPSDEEIITFYLKPKVHQRNFTC-STIGEVDLNRTEPWELPGEAKTGEKEWYFFFKKDRKYPTGVRTNRASPGGYWKATGKDKEINMDvA 2156 79************************99.78***********99999***********************************99742 PP NAM 97 gel...vglkktLvfykgrapkgektdWvmheyrle 129 + vg+kktLvfy+ rap+g+ktdWvmhe+rle Do003868.1 2157 -GVpllVGMKKTLVFYEDRAPRGKKTDWVMHEFRLE 2191 .22466*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03470	3.9E-18	73	116	IPR005381	Zinc finger-XS domain
Pfam	PF03468	1.7E-20	181	292	IPR005380	XS domain
Pfam	PF03469	1.1E-53	568	695	IPR005379	Uncharacterised domain XH
Pfam	PF03469	5.7E-48	965	1083	IPR005379	Uncharacterised domain XH
ProDom	PD968187	3.0E-6	1150	1564	No hit	No description
Pfam	PF03469	6.4E-51	1723	1840	IPR005379	Uncharacterised domain XH
SuperFamily	SSF101941	1.83E-56	2058	2226	IPR003441	NAC domain
PROSITE profile	PS51005	55.84	2061	2227	IPR003441	NAC domain
Pfam	PF02365	1.1E-24	2062	2190	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0031047	Biological Process	gene silencing by RNA
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2553 aa Download sequence Send to blast
MDLDMDDFID PYEEAEAEAA AEAAGVAPPE AEDSDDDPDE DDSDAESDYE EQSFGLLTSG 60 KHRVRNPDGT FRCPFCPGKK KQGYKIKDLL QHADGIGVSS KHRRHGRERA SHRAFARFVR 120 TDPSFAEDLV GITGILGAIK PTPANANGSG GSAIGEAKAN VPPAGSSSAP AENVVLPREI 180 EKYAWPWVCV LAAGAGFNAE EFADRVAMFS LVEVVPLFVD EVEGVETFAI VRFTNDWSGF 240 NDALTLQNHF SVNKLGKRDF ETRNSGVGAA EGDGSEGEVK VYGWVAREGD YNAGSVVGRF 300 LRKHTILKTI DEVSKTELEK SGEMVVKLAY QIEEKNRYLQ DLETKKNATE LSISRLEEDN 360 RKLHEAYNEE MRNLHRRARE NALRIFQENE NLKLELENKR RELNSRAKQL EKLSAENGND 420 RKTLDDEKQK ARDDNSELEL ASIEQQRADE DVLKLLDDQK REKEDVFARM LQLEKELLEK 480 QQLELEVERL NGTLQVMKHL EGDDDGDIHE KMEKLSERLE REKKRLEDLS GDLVRKERES 540 NDELQQARKE LIKGLEEELN GRTAIGIKRM GELDEKPFQN ACKRKYGRDD YQTQAAELVS 600 HWQEELKKPS WHPFKVVQVN GEDKEVLDDD DAKLKFLWIE YGDDVCNAVK TALMEINEYN 660 PSGRYVVPEL WNFREGRKAT MKEVLKYLFG QMDTTTKLGA GQNHEVESGS RKRKTAVMSE 720 DSISLVGNGE HSKVACDDSQ QLLKEIEDLR AQLDKDVKEL GYCEANEKLR VELTLKAKEI 780 RCLRKQNEDM QCKIDGVRKQ NEELLAKNDG MAKQNKELQA KNGGLTKQNE ELQAKNDGLT 840 KQNEELQAKN DDLMQRNEEL QAKNVCLVKQ NEEVQINNDS MRKRNGELEA KNGGLTKRNE 900 ELQAKNDSLT KWIEELKAKN DGLEDLSEGL VRKERESNDE PPQAQKESIV GLEDELNGQA 960 AIGIKRMGEL DEKPFQNACK RKYGNDDYQT KAAELVSSWQ EELKKPSWRP FKVVQVNGED 1020 KEVLDDDDAK LKFLWIEYGD DVCNAVKTAL MEIKRYDPSG QYMVPEFWNF KKGRKATMKE 1080 VLNCSRPGSW GRIWKQKEES CSYVQRFRLF GWEWRYVLLK THFDLSQSSS CHGFNICCPR 1140 AEHLEVEDSQ NLLKEIEDLK AQLDRDVKEL GYCEANEKLR VELALKAKEI QCLMKQNEEM 1200 QAKYDGMKKL NEELQNKNDG LAKQNQELQA KNDGLVKQNE VLQTSNDGMG MSNGELQAKN 1260 DGLTMQNEDL QAKNDSLATQ NVELQAKNDD LVKHNEELLA KNVGLLKHNA DLQANSDGMR 1320 KRNGELQAKN DSLTKRNEEL QANNVGLREQ NEELQTNNVG LVKXXEELQT DNEGMRKRNG 1380 ELQTMNGGLM NRNKELQAKI DGLMKKNEEL LAENVGLVKQ NADLQANSDG TRKRNGELQA 1440 KNDCITKWNE ELQAKNDGLR EQNEELQANN GGLVKQNEEL QTNNVGLVKK NEELQTDNEG 1500 MRKRNGELQT MNGGLMNRNK ELQAKIDGLR KKNEELQAKN DGLRKWNEKL QANNDGLTKR 1560 IEKLEAKNGG LMNQNNELQT KIDGLTKKNE ELQAKNDGLR KWNDEDVLKL LDDQKREKED 1620 VFARMLQLEK ELLEKQQLEL EVERLNGTLQ VMKHLEGDDD GDIHEKMEKL SERLEREKKR 1680 LEDLSGDLVR KERESNDELQ QARKELIKGL EEELNGRTAI GIKRMGELDE KPFQNACKRK 1740 YGRDDYQTQA AELVSHWQEE LKKPSWHPFK VVQVNGEDKE VLDDDDAKLK FLWIEYGDDV 1800 CNAVKTALME INEYNPSGRY VVPELWNFRE GRKATMKETT LRQAASSFEE IGRLQAQVTK 1860 LETAINQLMA NNCTLAETNE ALKEKVAAYA NDLERTRKKL EELESEKASA EQLMAMGMTL 1920 TVPTRSLEQI AAKLKEVIRH RKLEIAKNSA TVFGSHVLAI LKSHLPYLDL SVLKRGFKGS 1980 QKEAVELVES LQHQIEPMSS RTIQCNDQDT DQMPQEMDFP TQLDEELKAN MQGSQKDVKL 2040 STMLDHHREL QRMSGDIGLE LPPGFRFYPS DEEIITFYLK PKVHQRNFTC STIGEVDLNR 2100 TEPWELPGEA KTGEKEWYFF FKKDRKYPTG VRTNRASPGG YWKATGKDKE INMDVAGVPL 2160 LVGMKKTLVF YEDRAPRGKK TDWVMHEFRL EGSNRLPYPS SSSTSTSTVK SPDFEVGEWV 2220 VCRVFHRITG IKKAPAPPSY NLAMADGGID QSSIPMPTPL QFPMLSNFTM DPIASYYSTV 2280 GVNSSLALPM MPPMADMGYT GLQMNNIQFG NPMAIAPSMS YHQMENREVG TDGFMAAPES 2340 FDQTTAAAEI LSMAFWFREL VTEASPGLNS EISGGNYVLP EELPRRKRKA IAKRSKAKVD 2400 GVEFQNDMSQ RQMCSSRKEK ETESLQKQNE ELKAENEQLR KNHSYRFCIV FPLPVSYIYL 2460 LLRLYFCVYT VQVKPPRVPR LCRSCNTHVM HDYRNCPKRL QAASSPEEED GEDSKAKSIS 2520 LPILLPIFKL HTYYSANFAY ARSYARSAKL NRY

Sequence ? help Back to Top

Protein Sequence Length: 2553 aa Download sequence Send to blast

MDLDMDDFID PYEEAEAEAA AEAAGVAPPE AEDSDDDPDE DDSDAESDYE EQSFGLLTSG  60
KHRVRNPDGT FRCPFCPGKK KQGYKIKDLL QHADGIGVSS KHRRHGRERA SHRAFARFVR  120
TDPSFAEDLV GITGILGAIK PTPANANGSG GSAIGEAKAN VPPAGSSSAP AENVVLPREI  180
EKYAWPWVCV LAAGAGFNAE EFADRVAMFS LVEVVPLFVD EVEGVETFAI VRFTNDWSGF  240
NDALTLQNHF SVNKLGKRDF ETRNSGVGAA EGDGSEGEVK VYGWVAREGD YNAGSVVGRF  300
LRKHTILKTI DEVSKTELEK SGEMVVKLAY QIEEKNRYLQ DLETKKNATE LSISRLEEDN  360
RKLHEAYNEE MRNLHRRARE NALRIFQENE NLKLELENKR RELNSRAKQL EKLSAENGND  420
RKTLDDEKQK ARDDNSELEL ASIEQQRADE DVLKLLDDQK REKEDVFARM LQLEKELLEK  480
QQLELEVERL NGTLQVMKHL EGDDDGDIHE KMEKLSERLE REKKRLEDLS GDLVRKERES  540
NDELQQARKE LIKGLEEELN GRTAIGIKRM GELDEKPFQN ACKRKYGRDD YQTQAAELVS  600
HWQEELKKPS WHPFKVVQVN GEDKEVLDDD DAKLKFLWIE YGDDVCNAVK TALMEINEYN  660
PSGRYVVPEL WNFREGRKAT MKEVLKYLFG QMDTTTKLGA GQNHEVESGS RKRKTAVMSE  720
DSISLVGNGE HSKVACDDSQ QLLKEIEDLR AQLDKDVKEL GYCEANEKLR VELTLKAKEI  780
RCLRKQNEDM QCKIDGVRKQ NEELLAKNDG MAKQNKELQA KNGGLTKQNE ELQAKNDGLT  840
KQNEELQAKN DDLMQRNEEL QAKNVCLVKQ NEEVQINNDS MRKRNGELEA KNGGLTKRNE  900
ELQAKNDSLT KWIEELKAKN DGLEDLSEGL VRKERESNDE PPQAQKESIV GLEDELNGQA  960
AIGIKRMGEL DEKPFQNACK RKYGNDDYQT KAAELVSSWQ EELKKPSWRP FKVVQVNGED  1020
KEVLDDDDAK LKFLWIEYGD DVCNAVKTAL MEIKRYDPSG QYMVPEFWNF KKGRKATMKE  1080
VLNCSRPGSW GRIWKQKEES CSYVQRFRLF GWEWRYVLLK THFDLSQSSS CHGFNICCPR  1140
AEHLEVEDSQ NLLKEIEDLK AQLDRDVKEL GYCEANEKLR VELALKAKEI QCLMKQNEEM  1200
QAKYDGMKKL NEELQNKNDG LAKQNQELQA KNDGLVKQNE VLQTSNDGMG MSNGELQAKN  1260
DGLTMQNEDL QAKNDSLATQ NVELQAKNDD LVKHNEELLA KNVGLLKHNA DLQANSDGMR  1320
KRNGELQAKN DSLTKRNEEL QANNVGLREQ NEELQTNNVG LVKXXEELQT DNEGMRKRNG  1380
ELQTMNGGLM NRNKELQAKI DGLMKKNEEL LAENVGLVKQ NADLQANSDG TRKRNGELQA  1440
KNDCITKWNE ELQAKNDGLR EQNEELQANN GGLVKQNEEL QTNNVGLVKK NEELQTDNEG  1500
MRKRNGELQT MNGGLMNRNK ELQAKIDGLR KKNEELQAKN DGLRKWNEKL QANNDGLTKR  1560
IEKLEAKNGG LMNQNNELQT KIDGLTKKNE ELQAKNDGLR KWNDEDVLKL LDDQKREKED  1620
VFARMLQLEK ELLEKQQLEL EVERLNGTLQ VMKHLEGDDD GDIHEKMEKL SERLEREKKR  1680
LEDLSGDLVR KERESNDELQ QARKELIKGL EEELNGRTAI GIKRMGELDE KPFQNACKRK  1740
YGRDDYQTQA AELVSHWQEE LKKPSWHPFK VVQVNGEDKE VLDDDDAKLK FLWIEYGDDV  1800
CNAVKTALME INEYNPSGRY VVPELWNFRE GRKATMKETT LRQAASSFEE IGRLQAQVTK  1860
LETAINQLMA NNCTLAETNE ALKEKVAAYA NDLERTRKKL EELESEKASA EQLMAMGMTL  1920
TVPTRSLEQI AAKLKEVIRH RKLEIAKNSA TVFGSHVLAI LKSHLPYLDL SVLKRGFKGS  1980
QKEAVELVES LQHQIEPMSS RTIQCNDQDT DQMPQEMDFP TQLDEELKAN MQGSQKDVKL  2040
STMLDHHREL QRMSGDIGLE LPPGFRFYPS DEEIITFYLK PKVHQRNFTC STIGEVDLNR  2100
TEPWELPGEA KTGEKEWYFF FKKDRKYPTG VRTNRASPGG YWKATGKDKE INMDVAGVPL  2160
LVGMKKTLVF YEDRAPRGKK TDWVMHEFRL EGSNRLPYPS SSSTSTSTVK SPDFEVGEWV  2220
VCRVFHRITG IKKAPAPPSY NLAMADGGID QSSIPMPTPL QFPMLSNFTM DPIASYYSTV  2280
GVNSSLALPM MPPMADMGYT GLQMNNIQFG NPMAIAPSMS YHQMENREVG TDGFMAAPES  2340
FDQTTAAAEI LSMAFWFREL VTEASPGLNS EISGGNYVLP EELPRRKRKA IAKRSKAKVD  2400
GVEFQNDMSQ RQMCSSRKEK ETESLQKQNE ELKAENEQLR KNHSYRFCIV FPLPVSYIYL  2460
LLRLYFCVYT VQVKPPRVPR LCRSCNTHVM HDYRNCPKRL QAASSPEEED GEDSKAKSIS  2520
LPILLPIFKL HTYYSANFAY ARSYARSAKL NRY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-45	2047	2233	3	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-45	2047	2233	3	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-45	2047	2233	3	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-45	2047	2233	3	171	NO APICAL MERISTEM PROTEIN
4dul_A	7e-45	2047	2233	3	171	NAC domain-containing protein 19
4dul_B	7e-45	2047	2233	3	171	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	709	714	SRKRKT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do003868.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU966665	0.0	EU966665.1 Zea mays clone 296107 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004968205.1	0.0	factor of DNA methylation 1
TrEMBL	K3XF43	0.0	K3XF43_SETIT; Uncharacterized protein
STRING	Si000510m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.2	2e-62	NAC domain containing protein 80