PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | NAC | ||||||||
Protein Properties | Length: 297aa MW: 33700.8 Da PI: 7.6579 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.7 | 5.6e-33 | 18 | 93 | 53 | 129 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +e+++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k+ lvg++ktLvfykgrap+g+k+dW+mheyrle Do003840.1 18 EEQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPIYV-KNCLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 93 35679*************************************.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.249 | 1 | 113 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.1E-36 | 19 | 113 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-15 | 21 | 92 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MIGGGVRGSA EKCKIGTEEQ NDWYFFSHKD KKYPTGTRTN RATTAGFWKA TGRDKPIYVK 60 NCLVGMRKTL VFYKGRAPNG QKSDWIMHEY RLETNETGIP HEEGWVVCRV FRKRLATVQR 120 MADSPYWFND HAGFMAPDLG SPRQVAHHQQ SAVMYHRHQS SYPCKVELEY HHLLPQEHFL 180 QQLPQLESPK LPDLIGHVAT TLQPCSLTQE HGAPRYTVQE LQAEPVYLPA GDASDTDWRA 240 LDKFVASQLS HGDTTTPKGS SYSNPVQVFQ RAKEKEEEAL DYVSTSASCG GDNDLWK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-28 | 20 | 114 | 70 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-28 | 20 | 114 | 70 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-28 | 20 | 114 | 70 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-28 | 20 | 114 | 70 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-28 | 20 | 114 | 73 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-28 | 20 | 114 | 73 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-28 | 20 | 114 | 73 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-28 | 20 | 114 | 73 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-28 | 20 | 114 | 73 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-28 | 20 | 114 | 73 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-28 | 20 | 114 | 73 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-28 | 20 | 114 | 73 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-28 | 20 | 114 | 70 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-28 | 20 | 114 | 70 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT075089 | 0.0 | KT075089.1 Panicum virgatum secondary wall NAC master switch (SWN6B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976367.1 | 0.0 | NAC domain-containing protein 7 | ||||
Swissprot | Q9FWX2 | 1e-85 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A1E5W2H2 | 0.0 | A0A1E5W2H2_9POAL; NAC domain-containing protein 7 | ||||
STRING | Si010504m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2370 | 38 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 9e-78 | NAC 007 |
Publications ? help Back to Top | |||
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