PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003780.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 413aa    MW: 43569.7 Da    PI: 7.0238
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003780.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-093143521254
                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 RR ri +++ +L++l+P+     +k  + +++L +Ave+Ik+L
  Do003780.1 314 RRTRISKRLKKLQDLVPNM----DKQTNTSDMLDLAVEHIKEL 352
                 9*****************7....688***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.474302352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-8306358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-6314352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.90E-9314357No hitNo description
SuperFamilySSF474591.27E-10314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-10315357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MNRLTPSHHG AMPPPPGTGQ LARYGSAPGS FLAALADSVT RGGDPAPAPA HPVSRFYSGE  60
SSGLTSCESS CRTDGGGRPG ALERAYGGSG EIRVPPPEHQ HQQSLAPPGP PGGGGPGVSP  120
LFRHSSSPAG LLSRLMTDPH GMAPTRGMGS YSQAGTDATI AHGHRQLSSQ WSFSRQDLPQ  180
ISEMGVIPDI GESIVAGGCN SSSDGAGAQS SSYLSRNFSV SSWDDTNSIM FSSPSKKAKL  240
DAADDMVTSF SNIDSQFGLS ESSLEMSGMD DYMQLQQDSI ACRVRAKRGC ATHPRSIAER  300
VSSVPTSSAK SPERRTRISK RLKKLQDLVP NMDKQTNTSD MLDLAVEHIK ELKGQVECVV  360
VSITVIENAY WIVLAIFLAI FRYDPGAIGA ACIHVNGDGH PATQHFSLTI PNV
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814593.10.0transcription factor bHLH128-like
TrEMBLA0A1E5VJP70.0A0A1E5VJP7_9POAL; Transcription factor bHLH128
STRINGPavir.J01306.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-54bHLH family protein