PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003647.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bZIP | ||||||||
Protein Properties | Length: 243aa MW: 25015.1 Da PI: 6.5736 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46.6 | 7.6e-15 | 187 | 235 | 3 | 51 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 + +r++r++kNRe+A rsR+RK+a+i+eLe v +Le+eN +L e ee Do003647.1 187 AMQRQKRMIKNRESAARSRERKQAYIAELESLVTQLEEENAELLREQEE 235 689*************************************998877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.7E-5 | 185 | 243 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.7E-13 | 187 | 235 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.76 | 187 | 235 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 2.51E-19 | 189 | 239 | No hit | No description |
SuperFamily | SSF57959 | 1.44E-10 | 190 | 237 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.4E-13 | 190 | 235 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 192 | 207 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MASSRVMPSS SPSHTASDLA RFAQAASRPG GGGGSGLGSM NVEELLRGIY GDMPTPALPA 60 TGADRPMPPA PAPAPEIAAR KTAEQVWKEI TAGGGSGGTA APVAQAVVPA GAGGGAGAGG 120 PEMTLEDFLA REGAVREDDV RVSGPSAPAE GPVVMGFLGG AEGVGVAGGG GGRGRKRQLM 180 DPVDRAAMQR QKRMIKNRES AARSRERKQA YIAELESLVT QLEEENAELL REQEERHQKR 240 LKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003647.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816287.1 | 1e-108 | bZIP transcription factor 12 | ||||
Swissprot | Q0JHF1 | 4e-89 | BZP12_ORYSJ; bZIP transcription factor 12 | ||||
TrEMBL | A0A1E5WNC0 | 1e-168 | A0A1E5WNC0_9POAL; Uncharacterized protein (Fragment) | ||||
STRING | Pavir.J05659.1.p | 1e-115 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2665 | 37 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03970.1 | 3e-16 | G-box binding factor 4 |
Publications ? help Back to Top | |||
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