PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003634.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 673aa MW: 72068.7 Da PI: 6.3663 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.4 | 1.9e-11 | 547 | 595 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq Do003634.1 547 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 595 58**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.10.20.90 | 3.0E-7 | 11 | 86 | No hit | No description |
SuperFamily | SSF81383 | 1.57E-12 | 369 | 419 | IPR001810 | F-box domain |
PROSITE profile | PS50181 | 12.571 | 369 | 415 | IPR001810 | F-box domain |
Gene3D | G3DSA:1.20.1280.50 | 8.2E-11 | 372 | 424 | No hit | No description |
Pfam | PF12937 | 2.6E-7 | 374 | 416 | IPR001810 | F-box domain |
SMART | SM00256 | 4.4E-5 | 375 | 415 | IPR001810 | F-box domain |
SuperFamily | SSF47459 | 3.14E-17 | 542 | 611 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.24E-11 | 542 | 599 | No hit | No description |
PROSITE profile | PS50888 | 15.796 | 544 | 594 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-17 | 544 | 611 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.4E-9 | 547 | 595 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-10 | 550 | 600 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MDARGGAAVE THRVDLPPTA TLADVKTLLA AKLSAAQPVP SESVRLSLNR SEELVSPDPT 60 ATLPALGLAS GDLVFFTLSP LTALAPPAQA LPQNPVPGSG SVPTAMAVDS GKGSEQPGTG 120 GSSLQVPAVA VNPSVPAASD PAEAVDGGQG EAVDGGKGSE QTGTGGSSLQ VRAVAMNPSV 180 PAATSPADVV MAEAVDATTT KVWSSFVIRD LKKEMENVSG AEGTASGRLV AALHAALLEV 240 GFLTTNPMGA HLSLPQDWPS VASKPLAIKY TIPELSPMLP VSEEGKVVVL NFSLMPNFVM 300 VYGYVPGAQS EVRRLCLELP RLEPLLYLDS DQLSGVQEMG ILDLWRVLKD ELCLPLMISL 360 CHLNGLRLPP CLMALPADLK TKVLDFLPGD DLARVECTCK EMRNLAADDS LWKKFILKLK 420 TYGEGSSGAM SAKAMFGEAW QANKRRQKRP HPTFWNYGWG NSPYSRPIRQ PLIDTQLSRN 480 MNTGKCLKGG KRKGSGEESS SLHSLDETSA LLQREVSMEC VDEKAGGAGT NKEDYVHVRA 540 KRGQATNSHS LAERFRREKI NERMKLLQDL VPGCNKITGK AMMLDEIINY VQSLQRQVEF 600 LSMKLSAISP ELNCNLDLQD ILCSQEARAA FPGYSPQMSS VHLNLFKASQ PAAFNFLGFL 660 KVHFGVADSM KVE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003634.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797484.1 | 0.0 | F-box protein SKIP22-like | ||||
TrEMBL | A0A2S3ISQ6 | 0.0 | A0A2S3ISQ6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05268.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4536 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 3e-43 | bHLH family protein |