PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do003574.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 292aa MW: 32891.1 Da PI: 7.9371 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.9 | 6e-51 | 6 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhP+d+elv +yL++k+ g + + ++ +vd++kvePwdLp + + kewyf+s rd+kyatg+r+nrat+sgyWkatgkd++ Do003574.1 6 LPPGFRFHPRDDELVLDYLARKLGGGGavvV---SiygcpTMVDVDLNKVEPWDLPDIACIGGKEWYFYSLRDRKYATGQRTNRATDSGYWKATGKDRP 101 79***********************996552...334454699*************6555689************************************ PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r+ Do003574.1 102 ISR-KGLLVGMRKTLVFYQGRAPKGKKTEWVMHEFRM 137 *99.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-59 | 3 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.822 | 6 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-25 | 7 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 292 aa Download sequence Send to blast |
MVEAKLPPGF RFHPRDDELV LDYLARKLGG GGAVVVSIYG CPTMVDVDLN KVEPWDLPDI 60 ACIGGKEWYF YSLRDRKYAT GQRTNRATDS GYWKATGKDR PISRKGLLVG MRKTLVFYQG 120 RAPKGKKTEW VMHEFRMEGQ GDPMKLPFKE DWVLCRVFYK SRATIAKPPA ESSSYNIDAA 180 TTSLPPLIDN YNISFDQPGS SVQNLEGYEQ VPCFSNNPSH QPSSSMNAPL SSAMADQEQH 240 MGKSIRDVLM SQFSRFDGSV KRETPPQSNF SQDGFEYLAE SGFTQMWNSF NS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-51 | 2 | 161 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do003574.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT065512 | 0.0 | BT065512.1 Zea mays full-length cDNA clone ZM_BFb0202I06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681432.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-85 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A1E5VPB2 | 0.0 | A0A1E5VPB2_9POAL; NAC domain-containing protein 21/22 | ||||
STRING | Si006975m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56010.2 | 4e-88 | NAC domain containing protein 1 |