PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003551.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB_related | ||||||||
Protein Properties | Length: 243aa MW: 26989.2 Da PI: 6.7102 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.6 | 2.6e-17 | 38 | 82 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++ Do003551.1 38 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 82 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.204 | 1 | 32 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-11 | 18 | 45 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.22E-20 | 18 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.396 | 33 | 87 | IPR017930 | Myb domain |
SMART | SM00717 | 6.6E-16 | 37 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-15 | 38 | 82 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.66E-11 | 42 | 83 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-20 | 46 | 83 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MLYLLTSQNF RWRLNGLKRS GKSCRLRWVN YLRPDLKRGK ITPQEESIIV QLHALWGNRW 60 STIARSLPGR TDNEIKNYWR THFKKGKPSK NIERARARFL KQRQEMQNQK QQQLLQQEQV 120 AKNDVNEDGG ARAVTADDDD RGSAVVDDAC AAPPAVAETG GHHHHEDLIM DDAMDFMWPM 180 SCALLLHGAV HGAGAGGSCC GSTASDEYGS SEEDGATWGS LWNLDGLVVD DVAVDGAGAC 240 TLW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-16 | 19 | 85 | 40 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003551.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109620 | 1e-105 | AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004978126.1 | 1e-109 | transcription repressor MYB6 | ||||
TrEMBL | A0A3L6PVQ3 | 1e-109 | A0A3L6PVQ3_PANMI; Transcription repressor MYB6-like | ||||
STRING | Si010822m | 1e-109 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 4e-43 | myb domain protein 79 |