PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003525.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | TCP | ||||||||
Protein Properties | Length: 407aa MW: 41991.8 Da PI: 10.6783 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.6 | 5.5e-35 | 86 | 209 | 2 | 124 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssssasnsssgkaaksa 94 g+kdrhsk++T++g RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a ai +l+ + ++a ++ ea++ +++++ + + + Do003525.1 86 SGGKDRHSKVYTAKGIRDRRVRLSVPTAIQFYDLQDRLGFDQPSKAIEWLINAASDAIEKLPAL-DPAA-FAalpgpgEADAGKVKQQ------QGSRS 176 689*************************************************************.3333.223444332222222222......11122 PP TCP 95 akskksqksaasalnlak.esr..akararare 124 s+ s++s+ s l+l++ + r a ar re Do003525.1 177 GGSSTSETSKGSELSLSRsDARggGGAAARDRE 209 223333333333355544333322333333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-34 | 87 | 215 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.367 | 88 | 146 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MSSSACGGRR TGWRPWATEQ RGRVARAXXX GAPPGRSQQG AKRVRGGGVR GSEAEAAGAA 60 AWGQPPALPP AQGPGAGSRI YRVRASGGKD RHSKVYTAKG IRDRRVRLSV PTAIQFYDLQ 120 DRLGFDQPSK AIEWLINAAS DAIEKLPALD PAAFAALPGP GEADAGKVKQ QQGSRSGGSS 180 TSETSKGSEL SLSRSDARGG GGAAARDREV TVASTSAQAA SFTELLTGVA SAGAISPAEH 240 KQSWQQQSNV SAAAAADCVG IAHPGKGAHG LSTHAFSAPT AIKFGNAPPF GMVPAQPFNF 300 PSSVEMPHFS LGQDALAAPS SPAGDYSLNF SMSSGFLGAN RGTLQSNSQS NFSGHHHQQL 360 QRLDGPFLFG HAAAAAHPAS ENQLAASAAL QLWDGFRHSG MKEKSKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-25 | 93 | 147 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-25 | 93 | 147 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003525.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956595 | 0.0 | EU956595.1 Zea mays clone 1567541 TCP family transcription factor containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466344.1 | 0.0 | transcription factor PCF6 | ||||
Swissprot | Q10CE8 | 1e-114 | PCF6_ORYSJ; Transcription factor PCF6 | ||||
TrEMBL | A0A3L6TG38 | 0.0 | A0A3L6TG38_PANMI; Uncharacterized protein | ||||
STRING | Sb01g006020.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 2e-32 | TCP family protein |