PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003489.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 323aa    MW: 34866.6 Da    PI: 9.5457
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003489.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.8e-14117168155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr l+P++   ++++ + a+i+  A++++k+L+
  Do003489.1 117 QRQNHIAVERNRRRQMNEYLAALRALMPPS---YARRGDQASIVGGAIDFVKELE 168
                 79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.51E-14115172No hitNo description
SuperFamilySSF474591.57E-16115182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.878116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-14117179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-10122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MALLEAVVFP PDHSRVPCCV LRGYGVSSAG EFEGIIKRGV VVQEDGEPVA TPPHGSGCCA  60
WAGDAATSWV GPVPSTLATS SARRPVHHQP AVTRRLRRRR GTIAKASRMS VAEAESQRQN  120
HIAVERNRRR QMNEYLAALR ALMPPSYARR GDQASIVGGA IDFVKELEHH LQTLQAQKRP  180
AAAGHGSERF PGFFTFPQYS TAAAVANVVD DRASSSGENN RPTTRPGVAD VEAAVSEGHA  240
TVKVLAPRRQ QMLLRLLLGM QRRGLTALHL NASTIAADDH RMVLYTFTVK MMGEAWQLSS  300
AGDVAAAVHD TVADMDIAEE RAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117128RQNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003489.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966795.11e-133transcription factor bHLH94
TrEMBLA0A1E5UYM40.0A0A1E5UYM4_9POAL; Transcription factor bHLH96
STRINGSi007984m1e-132(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-43bHLH family protein