PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003355.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 306aa    MW: 33574.7 Da    PI: 6.5117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003355.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.4e-083680244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g+WT+eE +l+ +a ++   +   +W+++a++++ gR   ++  ++
       Do003355.1 36 GAWTQEENKLFERALARVDWDapdRWERVAAMLP-GRMVSDVMAHY 80
                     79****************99999***********.*******9999 PP

2Myb_DNA-binding45.71.5e-14150194347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
       Do003355.1 150 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 194
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.8E-63486IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-43682IPR009057Homeodomain-like
PROSITE profilePS500906.6673684IPR017877Myb-like domain
PfamPF002498.5E-73680IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-113691IPR009057Homeodomain-like
CDDcd001678.11E-73780No hitNo description
PROSITE profilePS5129417.568143199IPR017930Myb domain
SuperFamilySSF466891.36E-17145199IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-17146197IPR006447Myb domain, plants
SMARTSM007175.8E-13147197IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-12147193IPR009057Homeodomain-like
PfamPF002497.1E-12150194IPR001005SANT/Myb domain
CDDcd001671.93E-11150195No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTESWMEVLP PQPPAPYFLG QAGGRFLPDR QVPGPGAWTQ EENKLFERAL ARVDWDAPDR  60
WERVAAMLPG RMVSDVMAHY DDLENDVCFI EAGLVPFPHY AGGGASLSAG FTFDWDGGDD  120
AGGLGFKRSC YMLGGKRGRG PDQERKKGVP WTEEEHKLFL MGLKKYGRGD WRNISRNFVT  180
SRTPTQVASH AQKYFIRLNS GGKDKRRSSI HDITTVNLPD DDGGNPSLSP PSVLTAASTP  240
SSSGGPVISE QQFGVLVDNN KPAPPHHFMP HPYGNVKLEP GSSHHGGFLD DSVLMQMQCS  300
QLQLLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-15381071180RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003355.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542810.0BT054281.1 Zea mays full-length cDNA clone ZM_BFb0211P03 mRNA, complete cds.
GenBankBT0558020.0BT055802.1 Zea mays full-length cDNA clone ZM_BFb0203M07 mRNA, complete cds.
GenBankBT0666720.0BT066672.1 Zea mays full-length cDNA clone ZM_BFb0049J12 mRNA, complete cds.
GenBankHQ8587850.0HQ858785.1 Zea mays clone UT1771 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961904.10.0transcription factor DIVARICATA
SwissprotQ8S9H72e-78DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1E5WLU00.0A0A1E5WLU0_9POAL; Transcription factor DIVARICATA
STRINGSi022816m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.15e-75MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]