PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003318.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRF
Protein Properties Length: 372aa    MW: 40019.6 Da    PI: 9.3534
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003318.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.6e-24103147145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  Do003318.1 103 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 147
                 79****************************************986 PP
2QLQ61.81.9e-212862236
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                 FTaaQ+++L++Q+l+yKyL+a++PvPp+Ll++++
  Do003318.1 28 VFTAAQWAELEQQALIYKYLMAGVPVPPDLLLPVR 62
                5********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.5E-112763IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.072863IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088809.0E-162962IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.346103147IPR014977WRC domain
PfamPF088794.4E-21104146IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MLSSASSAAA GMGMGGGGYP PPQRGAAVFT AAQWAELEQQ ALIYKYLMAG VPVPPDLLLP  60
VRPSPHSAAA AFSFASPAAA ASPFYHHHHP SLSYYAYYGK KLDPEPWRCR RTDGKKWRCS  120
KEAHPDSKYC ERHMHRGRNR SRKPVESKTA SPAHPSQPQL STVTTTTRET VPLDSLTSGG  180
KTHGLSLGGA GSSQLHVDAS NAHYRYGSKY PLGGKADAGE LSFFSGASGN SRGFTIDSPT  240
DNSWHSLPSN VPPFTLSKSR DSGLLPGTYS YSQLEPPQEL GQVTIASLSQ EQERHSFSSG  300
AGAGAGGLLG NVKQENQPLR PFFDEWPGTR DSWSEMDDAR SNRTSFSTTQ LSISIPMPRC  360
KFPISPVLPL SI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003318.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811709.10.0growth-regulating factor 5-like isoform X1
SwissprotQ6AWY40.0GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA0A1E5VD470.0A0A1E5VD47_9POAL; Growth-regulating factor 5
STRINGPavir.Da02366.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110462431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-22growth-regulating factor 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]