PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003307.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB_related | ||||||||
Protein Properties | Length: 86aa MW: 9326 Da PI: 5.0176 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.4e-08 | 4 | 49 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT +l+ da ++ + +W Iar +g g+t ++k ++ Do003307.1 4 SWTFSQNKLFEDALDKYDQDtpdRWQNIARAVGGGKTVDDIKRHYA 49 7*****************99************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.4E-7 | 1 | 54 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 9.847 | 1 | 56 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 4.76E-11 | 3 | 55 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-5 | 4 | 49 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MSSSWTFSQN KLFEDALDKY DQDTPDRWQN IARAVGGGKT VDDIKRHYAE LVRDTDDIDA 60 TGLQNLQRGG SSSNSKGGGS GSSTGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003307.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167022.1 | 5e-28 | protein RADIALIS-like 4 isoform X1 | ||||
Refseq | XP_020167023.1 | 4e-28 | protein RADIALIS-like 4 isoform X2 | ||||
Swissprot | Q1A173 | 9e-22 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A1E5UQ38 | 3e-55 | A0A1E5UQ38_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da01122.1.p | 2e-33 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 7e-23 | RAD-like 6 |