PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003307.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 86aa    MW: 9326 Da    PI: 5.0176
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003307.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.4e-08449345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT    +l+ da  ++  +   +W  Iar +g g+t  ++k ++ 
       Do003307.1  4 SWTFSQNKLFEDALDKYDQDtpdRWQNIARAVGGGKTVDDIKRHYA 49
                     7*****************99************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.4E-7154IPR001005SANT/Myb domain
PROSITE profilePS512939.847156IPR017884SANT domain
SuperFamilySSF466894.76E-11355IPR009057Homeodomain-like
PfamPF002491.1E-5449IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MSSSWTFSQN KLFEDALDKY DQDTPDRWQN IARAVGGGKT VDDIKRHYAE LVRDTDDIDA  60
TGLQNLQRGG SSSNSKGGGS GSSTGR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003307.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167022.15e-28protein RADIALIS-like 4 isoform X1
RefseqXP_020167023.14e-28protein RADIALIS-like 4 isoform X2
SwissprotQ1A1739e-22RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1E5UQ383e-55A0A1E5UQ38_9POAL; Uncharacterized protein
STRINGPavir.Da01122.1.p2e-33(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-23RAD-like 6