PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003255.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 398aa    MW: 41839 Da    PI: 6.823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003255.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2224.2e-07184205223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  C++Cgk F+r  nL+ H+r H
  Do003255.1 184 FCEICGKGFRRDANLRMHMRAH 205
                 6*******************99 PP
2zf-C2H212.40.00049272296123
                 EEETTTT..EEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                 y C+ Cg  k+F    +L++H+r +
  Do003255.1 272 YACERCGgkKRFAVLADLRSHLRHC 296
                 89********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.68E-6180205No hitNo description
PROSITE profilePS5015711.676183205IPR007087Zinc finger, C2H2
SMARTSM003550.0017183205IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-6183205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
SMARTSM0035576234267IPR015880Zinc finger, C2H2-like
SMARTSM0035517272295IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDLDSTSNQV GGAAGSRGTA IASRGATAPP PLTMPGGEPS GALVGAAGGG AGGADGDPRV  60
ALLRLAALGD RVAAVRGRIA ASISGEAQPL SYADIQSVSS EISSAAQLVV LNAASLLASS  120
VPFPAPPPPP TAAAPTPSPA PVREIPAAAA SAQEQPLEVA AKGDGDYEVV ELDATELLAE  180
HVHFCEICGK GFRRDANLRM HMRAHGDRFK TLDALSRPVH GKPKPPAGGR EVRFSCPFAG  240
CNRNRAHRRF RPLKSAVCAR NHFRRSHCPK LYACERCGGK KRFAVLADLR SHLRHCGEEA  300
QWRCSCGTTF SRKDKLFGHL ALFEGHTPAV TEPNKNVAAE PTEPILDAME EGGIEEGNCD  360
QEEDEEGGYD PQFFKEWMEE LRGGASGLNW PGPAAAGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003255.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794886.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A1E5VDK30.0A0A1E5VDK3_9POAL; Zinc finger protein STOP1-like protein
STRINGSi017455m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.36e-70C2H2 family protein