PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do003214.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | C3H | ||||||||
Protein Properties | Length: 119aa MW: 12365 Da PI: 10.2574 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.2 | 2.7e-08 | 95 | 110 | 12 | 27 |
TS--TTTTT-SS-SSS CS zf-CCCH 12 tGtCkyGdrCkFaHgp 27 +G C +GdrC+FaHg+ Do003214.1 95 SGSCTFGDRCHFAHGE 110 69************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54791 | 1.61E-14 | 20 | 93 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.3E-15 | 20 | 91 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.7E-9 | 22 | 92 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.634 | 23 | 87 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 2.3E-11 | 25 | 88 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 6.75E-12 | 25 | 87 | No hit | No description |
SuperFamily | SSF90229 | 4.87E-6 | 94 | 115 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.4E-6 | 95 | 110 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-10 | 95 | 116 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.216 | 96 | 111 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MDATRKRGAP EGANGAGGPK RARATAKISV DASLAGGIIG KGGTNTKHIS RVTGAKLAIR 60 DNEADPNLKN IELEGTFDQI KHASAMVTEL IVRISGSCTF GDRCHFAHGE SELRKPAAA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do003214.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063537 | 2e-73 | BT063537.1 Zea mays full-length cDNA clone ZM_BFc0074M08 mRNA, complete cds. | |||
GenBank | BT063925 | 2e-73 | BT063925.1 Zea mays full-length cDNA clone ZM_BFc0120K02 mRNA, complete cds. | |||
GenBank | BT087874 | 2e-73 | BT087874.1 Zea mays full-length cDNA clone ZM_BFb0279J08 mRNA, complete cds. | |||
GenBank | EU952598 | 2e-73 | EU952598.1 Zea mays clone 1284141 mRNA sequence. | |||
GenBank | EU968008 | 2e-73 | EU968008.1 Zea mays clone 312808 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds. | |||
GenBank | JX428491 | 2e-73 | JX428491.1 Zea mays subsp. mays clone pUT3088 C3H18 C3H type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965878.1 | 2e-54 | zinc finger CCCH domain-containing protein 44 | ||||
Swissprot | Q69XQ3 | 8e-55 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A1E5UYV9 | 3e-80 | A0A1E5UYV9_9POAL; Zinc finger CCCH domain-containing protein 44 | ||||
STRING | Pavir.Db00748.1.p | 1e-53 | (Panicum virgatum) | ||||
STRING | Pavir.J02805.1.p | 1e-53 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 3e-30 | C3H family protein |