PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do003107.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Dof

Protein Properties

Length: 357aa MW: 36046.9 Da PI: 8.6613

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do003107.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	64	125	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Do003107.1 64 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 125 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	63	113	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-33	66	122	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	68	122	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	70	106	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MEEMLMAGNT NPNQNPSPPP AAPSAPGAQR ATGAPAAAAA APGAGAAPGA GAGAGTERRA 60 RPQKEKALNC PRCNSTNTKF CYYNNYSLQQ PRYFCKTCRR YWTEGGSLRN VPVGGGSRKN 120 KRSSSAVSSA AAAAVSTSAA VSGTIPVGLA AKNPKLMHEG AHDLNLAFPH HNGRGLQPPE 180 FTAFPSLESS SVCNPGATMT GNGAAGRGVG ALSAMELLRS TGCYVPLQHV HLGMPPEYAA 240 AGFALGDFRM PPPPQSQSVL GFSLDTHGTG AGGYSAGLQG VQESAAGRLL FPFEDLKPAV 300 NAGGGANNGA ADQYEHSKDQ AGDGSGASGV TGGHETPGFW SNSMIGNGSS NGGGGHW

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MEEMLMAGNT NPNQNPSPPP AAPSAPGAQR ATGAPAAAAA APGAGAAPGA GAGAGTERRA  60
RPQKEKALNC PRCNSTNTKF CYYNNYSLQQ PRYFCKTCRR YWTEGGSLRN VPVGGGSRKN  120
KRSSSAVSSA AAAAVSTSAA VSGTIPVGLA AKNPKLMHEG AHDLNLAFPH HNGRGLQPPE  180
FTAFPSLESS SVCNPGATMT GNGAAGRGVG ALSAMELLRS TGCYVPLQHV HLGMPPEYAA  240
AGFALGDFRM PPPPQSQSVL GFSLDTHGTG AGGYSAGLQG VQESAAGRLL FPFEDLKPAV  300
NAGGGANNGA ADQYEHSKDQ AGDGSGASGV TGGHETPGFW SNSMIGNGSS NGGGGHW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do003107.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582410	0.0	KC582410.1 Sorghum bicolor dof16 protein (dof16) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826521.1	1e-175	dof zinc finger protein 2-like isoform X2
Swissprot	B9F1L8	1e-123	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A1E5VJZ3	0.0	A0A1E5VJZ3_9POAL; Uncharacterized protein
STRING	Pavir.Aa00902.1.p	1e-166	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	9e-34	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]