PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Do003038.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 27282.8 Da PI: 7.9032 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.5 | 1.8e-11 | 93 | 138 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+r+N f Lr +P+ +++ a+ L Av YI +L Do003038.1 93 SHVEAERQRRERLNRLFCDLRAAVPTV-----SRMDRASLLSDAVAYIAEL 138 799***********************6.....49**************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.9 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.26E-14 | 91 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.20E-10 | 93 | 139 | No hit | No description |
Pfam | PF00010 | 5.4E-9 | 93 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-13 | 93 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-9 | 95 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MDQLVWPASF CGPPSPASFF SAVGNHQYPA LEFQSCDDVA DQWLAAGDDV LNENDDSEPR 60 DAGANPPSSA PPLAKRRKRG RKAGPRTARP TISHVEAERQ RRERLNRLFC DLRAAVPTVS 120 RMDRASLLSD AVAYIAELRG RVVQLEEAEA EARRTIAASV SRGAPEQENI ALEARMVGRA 180 EAALRLTTTA SRHAPARLMA ALRALDLPVQ HACVCRVGGV TVQDVVVDVP SAGLRGEGRL 240 RAALLHVSLQ ESG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-18 | 92 | 146 | 7 | 61 | Transcription factor MYC2 |
5gnj_B | 5e-18 | 92 | 146 | 7 | 61 | Transcription factor MYC2 |
5gnj_E | 5e-18 | 92 | 146 | 7 | 61 | Transcription factor MYC2 |
5gnj_F | 5e-18 | 92 | 146 | 7 | 61 | Transcription factor MYC2 |
5gnj_G | 5e-18 | 92 | 146 | 7 | 61 | Transcription factor MYC2 |
5gnj_I | 5e-18 | 92 | 146 | 7 | 61 | Transcription factor MYC2 |
5gnj_M | 5e-18 | 92 | 146 | 7 | 61 | Transcription factor MYC2 |
5gnj_N | 5e-18 | 92 | 146 | 7 | 61 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 98 | 103 | RQRRER |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Do003038.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP097341 | 6e-50 | FP097341.1 Phyllostachys edulis cDNA clone: bphylf031p01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002444643.1 | 4e-81 | transcription factor bHLH14 | ||||
TrEMBL | A0A1E5VZQ0 | 1e-180 | A0A1E5VZQ0_9POAL; Uncharacterized protein | ||||
STRING | Sb07g025310.1 | 2e-80 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32640.1 | 8e-18 | bHLH family protein |