PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003037.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family RAV
Protein Properties Length: 371aa    MW: 39846.8 Da    PI: 10.2652
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003037.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2422.4e-1373121155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  Do003037.1  73 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPNEEAAARAYDVAALRYRG 121
                 78****9888.8*********......44*************************98 PP
2B399.52e-31188285190
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                 f+k+ tpsdv+k++rlv+pk++ae+h       +  + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD+vvF+++    e+
  Do003037.1 188 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrapEAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTVVFSHSTYgPEK 285
                 89**************************998886677799**************************************************87554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-973121IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-1773129IPR016177DNA-binding domain
CDDcd000187.95E-1473129No hitNo description
PROSITE profilePS5103221.93174129IPR001471AP2/ERF domain
SMARTSM003807.5E-2474135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-2174129IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.0E-38186301IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.29E-30186286IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-29187279No hitNo description
PfamPF023624.1E-28188280IPR003340B3 DNA binding domain
SMARTSM010195.8E-22188292IPR003340B3 DNA binding domain
PROSITE profilePS5086314.198188295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSPTAAADSS STTSRSSSAS TATTVSGAAQ QQPAAAAQGG GVAGGEVVSP ADEQAVTSQP  60
SVAAAAAVKQ GSSRYKGVVP QPNGRWGAQI YERHARVWLG TFPNEEAAAR AYDVAALRYR  120
GREAATNFPG AGASEPELAF LAAHSKAEIV DMLRKHTYAD ELRQGLRRGR GMGARAQPTP  180
AWARALLFEK AVTPSDVGKL NRLVVPKQHA EKHFPLKRAP EAATGKGVLL NFEDGEGKVW  240
RFRYSYWNSS QSYVLTKGWS RFVREKGLRA GDTVVFSHST YGPEKQLFID CTKTKTAATD  300
AAPAPTPAEK PKEARVVKLF GVDIAGDGCQ KRARPVEMAF EQGQEFFKKQ CVAHHRSPAL  360
GAFLLEQRSY A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-4918730213125DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003037.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958120.0FP095812.1 Phyllostachys edulis cDNA clone: bphyem125h21, full insert sequence.
GenBankFP0968350.0FP096835.1 Phyllostachys edulis cDNA clone: bphyem207b07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814327.10.0AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS01e-152Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A1E5VZT60.0A0A1E5VZT6_9POAL; AP2/ERF and B3 domain-containing protein
STRINGPavir.Ea00549.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.26e-90related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]