PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do003007.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 344aa    MW: 35829.6 Da    PI: 6.7966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do003007.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.7e-15191237455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h ++ErrRR++iN++f eL +++P +     kK++Ka+iL  Av+Y+++Lq
  Do003007.1 191 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVRELQ 237
                 5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.955187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-19191246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-13192237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17192246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.20E-16192241No hitNo description
SMARTSM003535.1E-17193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDRHMEDSST FLQWAMNQLH HQHPSTAAPT ASAYQDGSGA GSSGAGDREA VFPSLQALRS  60
GASPSQSHAV AASVRVCDLT VQVDHRTNSS SSGDSPGAGA AMDHGAAAGW SPHTARSRTT  120
GLGGGSNSRP MSWNFSAASA QPTGESAGVC LAPPDAAAAA RVQLASAGRR GGSAGSAAAT  180
AAASSPGPVQ DHIIAERRRR EKINQRFIEL STVIPGLKKM DKATILGDAV KYVRELQEKV  240
KTLEEDGAHS GAGSSIQSAV IFKKPCHLPE DEAMASSHGG DDGMQLPEIE ARLSEKSVLL  300
RIHCYSARGL LVEEGFSTTV DEIVRSINSV LHQHYSSSSE ETRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-14191246863Transcription factor MYC2
5gnj_B6e-14191246863Transcription factor MYC2
5gnj_E6e-14191246863Transcription factor MYC2
5gnj_F6e-14191246863Transcription factor MYC2
5gnj_G6e-14191246863Transcription factor MYC2
5gnj_I6e-14191246863Transcription factor MYC2
5gnj_M6e-14191246863Transcription factor MYC2
5gnj_N6e-14191246863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200ERRRRE
2196201RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo003007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808672.10.0transcription factor bHLH25-like
RefseqXP_025808673.10.0transcription factor bHLH25-like
RefseqXP_025808674.10.0transcription factor bHLH25-like
RefseqXP_025808675.10.0transcription factor bHLH25-like
TrEMBLA0A1E5USM30.0A0A1E5USM3_9POAL; Transcription factor bHLH25
STRINGPavir.J30022.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-30bHLH family protein