PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002986.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | LSD | ||||||||
Protein Properties | Length: 87aa MW: 9292.08 Da PI: 8.3808 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.8 | 4.2e-14 | 27 | 51 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCr+lL+YP+GA+sV+Ca+C tV Do002986.1 27 CTGCRNLLMYPAGATSVCCAVCSTV 51 9**********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.4E-13 | 24 | 54 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.3E-11 | 27 | 51 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MPVPLAPYPT PPVPFTPPNG AQSQLVCTGC RNLLMYPAGA TSVCCAVCST VTAVPAPGLT 60 WCRAEAQHMM FLKILRSPMK ADSERML |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002986.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067011 | 9e-56 | BT067011.1 Zea mays full-length cDNA clone ZM_BFb0148P15 mRNA, complete cds. | |||
GenBank | BT084380 | 9e-56 | BT084380.2 Zea mays full-length cDNA clone ZM_BFb0107G11 mRNA, complete cds. | |||
GenBank | EU972982 | 9e-56 | EU972982.1 Zea mays clone 391080 LOL1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002445097.1 | 3e-33 | protein LSD1 | ||||
Refseq | XP_004972784.2 | 3e-33 | protein LSD1 | ||||
Refseq | XP_022683193.1 | 3e-33 | protein LSD1 | ||||
Refseq | XP_025820445.1 | 3e-33 | protein LSD1 | ||||
Refseq | XP_025820446.1 | 3e-33 | protein LSD1 | ||||
Refseq | XP_025820447.1 | 3e-33 | protein LSD1 | ||||
Refseq | XP_025820449.1 | 3e-33 | protein LSD1 | ||||
Swissprot | Q0J7V9 | 6e-34 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | A0A1E5UV21 | 3e-56 | A0A1E5UV21_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa01884.1.p | 1e-32 | (Panicum virgatum) | ||||
STRING | Pavir.J14727.1.p | 6e-33 | (Panicum virgatum) | ||||
STRING | ORUFI08G03990.2 | 2e-32 | (Oryza rufipogon) | ||||
STRING | Si014603m | 1e-32 | (Setaria italica) | ||||
STRING | Sb07g004050.1 | 1e-32 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Publications ? help Back to Top | |||
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