PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002982.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 313aa    MW: 32903.1 Da    PI: 9.2383
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002982.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07255298243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      g+W++ +d  l++a k+++++   +W+++a+ ++ g+t   c  r
       Do002982.1 255 GAWSAGDDRALLNALKEFPKDiamRWEKVAAAVP-GKTKAACMKR 298
                      79********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.156159206IPR017877Myb-like domain
SMARTSM007170.0049163216IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-4164200IPR009057Homeodomain-like
SuperFamilySSF466892.17E-7165208IPR009057Homeodomain-like
CDDcd001676.05E-5166208No hitNo description
PROSITE profilePS500906.934249303IPR017877Myb-like domain
SMARTSM007175.1E-5253305IPR001005SANT/Myb domain
SuperFamilySSF466893.44E-9253302IPR009057Homeodomain-like
PfamPF002499.5E-7255298IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-5255302IPR009057Homeodomain-like
CDDcd001675.70E-7256303No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEFVDPWDSQ SRARVVHSGS NSTSSTMVRA SLSLPHAVSC AAAAVALLAA ACYLPPAYQI  60
LSSVLVWIAS SLLLAPFAPS SATGGDISVG RGRLLPAQEP AQEPIPDPAP APRRARRQNP  120
VQAPTKPSDP VAAPVQSAAS LQPLQKATAA GGAGVDGGER EEDTGEWTDQ ELEVLRRQMV  180
KHPAGEPQRW EKIAAVFGGR RTPESVIRAA KSSAAAAGGG SFEQFLRKRK PLDPRAEADR  240
DDAGDNAGGG ESADGAWSAG DDRALLNALK EFPKDIAMRW EKVAAAVPGK TKAACMKRVT  300
ELKRDFRSTK AAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225230LRKRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002982.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972787.11e-160dnaJ homolog subfamily C member 2
TrEMBLA0A1E5UV950.0A0A1E5UV95_9POAL; Uncharacterized protein
STRINGSi014113m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.12e-43MYB_related family protein