PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do002975.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 29104.5 Da PI: 10.5769 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.9 | 8.3e-17 | 20 | 65 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v ++G+ +W++Ia+++ gR++k+c++rw++ Do002975.1 20 RGHWRPGEDEKLRQLVDKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 65 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 60.6 | 3.2e-19 | 73 | 116 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eE+e+l++a++ +G++ W++Iar ++ gRt++ +k++w+ + Do002975.1 73 RPFTEEEEERLLNAHRAHGNK-WALIARLFP-GRTDNAVKNHWHVV 116 69*******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.087 | 15 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-30 | 18 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 19 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-16 | 20 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 21 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.01E-13 | 23 | 64 | No hit | No description |
PROSITE profile | PS51294 | 27.579 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-16 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-16 | 72 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.63E-13 | 74 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-22 | 74 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MASSSTTNTS DGAKSSSCPR GHWRPGEDEK LRQLVDKYGP QNWNSIAEKL EGRSGKSCRL 60 RWFNQLDPRI NKRPFTEEEE ERLLNAHRAH GNKWALIARL FPGRTDNAVK NHWHVVMARR 120 SRERSRLLAR ASSSPSSAYP FGTGAPATSS LCFGFSKLGG GGRGGLFRSP AAAAPTSLFK 180 SFGTATGSNG LLGPSYEAVR YSYSGKQPAA PVSITFSSPR EALAMDTGHR GRHEQHQKDY 240 HASDGEEPLK RKDVPFIDFL GVGVSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-32 | 20 | 120 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-32 | 20 | 120 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-32 | 20 | 120 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do002975.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065675 | 0.0 | BT065675.1 Zea mays full-length cDNA clone ZM_BFc0014F11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025827950.1 | 1e-152 | myb-related protein A-like | ||||
TrEMBL | A0A1E5UNM7 | 0.0 | A0A1E5UNM7_9POAL; Transcription factor MYB44 | ||||
STRING | Pavir.Hb01200.1.p | 1e-148 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 4e-61 | myb domain protein 52 |