PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002975.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 266aa    MW: 29104.5 Da    PI: 10.5769
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002975.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.3e-172065147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v ++G+ +W++Ia+++  gR++k+c++rw++ 
       Do002975.1 20 RGHWRPGEDEKLRQLVDKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 65
                     899*****************************.***********996 PP

2Myb_DNA-binding60.63.2e-1973116247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eE+e+l++a++ +G++ W++Iar ++ gRt++ +k++w+ +
       Do002975.1  73 RPFTEEEEERLLNAHRAHGNK-WALIARLFP-GRTDNAVKNHWHVV 116
                      69*******************.*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.0871566IPR017930Myb domain
SuperFamilySSF466894.49E-3018113IPR009057Homeodomain-like
SMARTSM007171.4E-131968IPR001005SANT/Myb domain
PfamPF002492.4E-162065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-262173IPR009057Homeodomain-like
CDDcd001671.01E-132364No hitNo description
PROSITE profilePS5129427.57967121IPR017930Myb domain
SMARTSM007172.3E-1671119IPR001005SANT/Myb domain
PfamPF002492.8E-1672115IPR001005SANT/Myb domain
CDDcd001671.63E-1374117No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2274119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MASSSTTNTS DGAKSSSCPR GHWRPGEDEK LRQLVDKYGP QNWNSIAEKL EGRSGKSCRL  60
RWFNQLDPRI NKRPFTEEEE ERLLNAHRAH GNKWALIARL FPGRTDNAVK NHWHVVMARR  120
SRERSRLLAR ASSSPSSAYP FGTGAPATSS LCFGFSKLGG GGRGGLFRSP AAAAPTSLFK  180
SFGTATGSNG LLGPSYEAVR YSYSGKQPAA PVSITFSSPR EALAMDTGHR GRHEQHQKDY  240
HASDGEEPLK RKDVPFIDFL GVGVSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-32201204104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-32201204104C-Myb DNA-Binding Domain
1msf_C2e-32201204104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002975.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656750.0BT065675.1 Zea mays full-length cDNA clone ZM_BFc0014F11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827950.11e-152myb-related protein A-like
TrEMBLA0A1E5UNM70.0A0A1E5UNM7_9POAL; Transcription factor MYB44
STRINGPavir.Hb01200.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.14e-61myb domain protein 52