PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002955.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARF
Protein Properties Length: 895aa    MW: 98673.5 Da    PI: 6.1615
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002955.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.8e-23129230199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        ++++ +  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+++F   ++++ +l
  Do002955.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPVQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSIIFI--WNDNNQL 223
                 99*****************************85545444..8************************************************..7777778 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  Do002955.1 224 LLGIRRA 230
                 ***9997 PP
2Auxin_resp118.46e-39255338183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFvv+++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+ rWpnS+Wrs+k
  Do002955.1 255 AAHAAATNSRFTIFYNPRASPSEFVVPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSERWPNSHWRSVK 338
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-47117258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-41121244IPR015300DNA-binding pseudobarrel domain
CDDcd100173.22E-21128229No hitNo description
PfamPF023622.6E-21129230IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449129231IPR003340B3 DNA binding domain
SMARTSM010191.2E-24129231IPR003340B3 DNA binding domain
PfamPF065072.0E-34255338IPR010525Auxin response factor
PfamPF023091.3E-7759847IPR033389AUX/IAA domain
SuperFamilySSF542779.81E-7761837No hitNo description
PROSITE profilePS5174523.182762846IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MNLSPSKMAE PSPESEGEQR CLNSELWHAC AGPLVSLPMV GSRVVYFPQG HSEQVAASTN  60
KEVDAQIPNY PNLPPQLICQ LHNVTMHADA ETEEVYAQMT LQPLSPEEQK EPFLPIELGA  120
GSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPVQELI ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLIAG DSIIFIWNDN NQLLLGIRRA NRPQTVMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVV PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDSERWP NSHWRSVKVG WDESTAGDKQ PRVSLWEIEP  360
LTTFPMYPTA FPLRLKRPWA SGLPMFNGGR SDEFARYSSL MWLRDGNRGA QSLNFQGLGV  420
SPWLQPRIDY PLLGLKPDTY QQMAAAALEE IRGGDHLKQT SSLLPVQQTQ NFNGGLDPLY  480
GNPVVPQMQF QSQQSPLQAV QQGYGQNTGN SGFLQSQLQQ LQLQKQQEPP PQQQQTQQVL  540
QQQSHREMQQ HISSSCHDIT NVASSMSESG SASQSQSSLP PGSSFYQQNL FEGNSGSGLH  600
LHNSFHNFSS QETSNLLNLP RSGQLMASEG WPSKRLAVEP LANLEAQSVQ LKLEKASHQS  660
NVSHISGTLP PLSARDGSSA QACGTNVQSH LLTSSFGIHD GMTTVRSGGV GSGTDAITIA  720
SLRYSDVNFL PENSLATSSC LGESGTFNSL DDVCGVNPSQ GGTFVKVYKS GSLGRSLDIT  780
RFSSYYELRS ELERLFGLEG QLEDPVRSGW QLVFVDREND ILLVGDDPWQ EFVNSVWCIK  840
ILSPQDVQQM VRGGDNLLST PGATMLQSNA CDDYSASHNM QNLTGSIAPV VPLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1642235951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002955.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279630.0KJ727963.1 Zea mays clone pUT6075 ARF transcription factor (ARF34) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963222.10.0auxin response factor 25
SwissprotQ2QM840.0ARFY_ORYSJ; Auxin response factor 25
TrEMBLA0A1E5UNI10.0A0A1E5UNI1_9POAL; Auxin response factor
STRINGSi021157m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127122934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S, et al.
    CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.
    Plant Physiol., 2014. 165(3): p. 1035-1046
    [PMID:24808099]