PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002928.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Nin-like
Protein Properties Length: 847aa    MW: 93148.4 Da    PI: 6.632
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002928.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.46.9e-29531582152
      RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                 aek++sl++l++yF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rkik++
  Do002928.1 531 AEKTVSLQVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKIKKV 582
                 5899**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.734521602IPR003035RWP-RK domain
PfamPF020422.3E-25534582IPR003035RWP-RK domain
SuperFamilySSF542771.31E-21743835No hitNo description
Gene3DG3DSA:3.10.20.2401.3E-24749830No hitNo description
PROSITE profilePS5174521.708750832IPR000270PB1 domain
SMARTSM006668.1E-22750832IPR000270PB1 domain
CDDcd064074.22E-40751830No hitNo description
PfamPF005648.1E-17751830IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MEEGGGDPQP SVSLQARTPS EGAAAVDLDL LEQLLSGDNG WFEVVSRSPN SLASPPPAAF  60
FSADVTATTT TQAANTSWWI QTGSTSPSSV RERFSQALSY IRETQSDGDV LVQLWVPFNR  120
DDGKLVLTTS GQPFTLDQRS DSLIRFREVS TKYQFSADVK SGDSPGLPGR VFIGRLPEWS  180
PDIRYFTSYE YPRVRDAQYL DIHGTMGLPV FEKGSYNCLG VIELIMTRQK LNFTSELNTI  240
CSALQAVNLR STEVSSIPRI QVSTASYKDA LPEILEVLRA ACLTHKLPLA QTWVTCAQQG  300
KRGSRHSDEN YRYCISTIDE ACFVNEPKMQ DFHDACSEHH LLRGQGVAGK AFTTNQPCFL  360
PDIGSSTKLE YPLSHHAKIF DLKGAVAIRL RCTRTGTADF VLEFFLPTDC EALEEQKAVL  420
DSLSGTMRGV CQTLRVVTGK EMEDEATREM NELNSFTPQG KNKVEELSFG GNSADRRGEA  480
SWTSLAETSQ QESELAALRM HGMFSSGGQG PSLSGAQATA EGSKAKRRTK AEKTVSLQVL  540
RQYFAGSLKD AARSLGVCPT TLKRICRQHG ITRWPSRKIK KVDHSLRKLQ QIIDSVHGAE  600
TSFQLNTLYK DLTNTSVSSE NNLSGSITIP TTYQSNLTDL DKHQHHKSNS NVQSTSHSHS  660
SCSHNSDSSP SCSGGATKHA PQGIIDLMTS VNPVKDSPIQ TLQTENTSLY EHFSVHEAPI  720
DLLQDVTEKA NGGQHSSRSP SSPKQNAVAN MRVKATFGSE KVRFRLNPEC DFQELKHEIA  780
KRLSIDTSSL VLKYLDDDSE WVLMTCDADL QECLHVYKLA DIQTIKISVH LAVSPATQVT  840
TGHTCLS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002928.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9712710.0EU971271.1 Zea mays clone 360961 NIN-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800527.10.0protein NLP1-like isoform X2
TrEMBLA0A1E5UP360.0A0A1E5UP36_9POAL; Protein NLP5
STRINGSi028915m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55543852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein