PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do002877.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRF
Protein Properties Length: 351aa    MW: 37683.9 Da    PI: 9.2284
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do002877.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.3e-2489132144
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                 d+epgrCrRtDGKkWRCsr++ +++k+CE+H+hrg+srsrk++e
  Do002877.1  89 DPEPGRCRRTDGKKWRCSREAHGDSKYCEKHIHRGKSRSRKPVE 132
                 79***************************************998 PP
2QLQ58.12.7e-201650236
         QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                 FTa+Q+q+L++Q+l+yKy+a++ PvP++L+++++
  Do002877.1 16 LFTASQWQELEHQALIYKYMASGSPVPHDLVLPLR 50
                5*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.1E-91551IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.6841651IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.4E-151749IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.7589133IPR014977WRC domain
PfamPF088791.3E-1990132IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MMLSGHGGGG GGGRRLFTAS QWQELEHQAL IYKYMASGSP VPHDLVLPLR LATGVDTAPS  60
LAFPPQTTPS LGYWGCYGAG AQFGRKAEDP EPGRCRRTDG KKWRCSREAH GDSKYCEKHI  120
HRGKSRSRKP VEAVTSSATS PAAGAGAYRP SALSISPPRA PDAVPSFGHH HHQQQQQQHL  180
HHGASSARAP AQTTATGPLQ LHLDASLHAA SPPPSYHRYA HAYAHYAPQP SLFPGGGYGH  240
GQSKELLQDA ELRHRHYLAL GADLSLDKPH AAAAAGHVQD AASTEKPLRR FFDEWPREGG  300
DARPWTTMGA EDATQLSISI PAASPSDLAA AAARYHNGEL LHEQIKRPGV F
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo002877.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0400711e-150BT040071.1 Zea mays full-length cDNA clone ZM_BFc0063G19 mRNA, complete cds.
GenBankBT0415401e-150BT041540.1 Zea mays full-length cDNA clone ZM_BFc0173L15 mRNA, complete cds.
GenBankBT0553901e-150BT055390.1 Zea mays full-length cDNA clone ZM_BFb0108H20 mRNA, complete cds.
GenBankEF5158501e-150EF515850.1 Zea mays putative growth-regulating factor 11 (GRF11) mRNA, complete cds.
GenBankJX4699851e-150JX469985.1 Zea mays subsp. mays clone UT3345 GRF-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813440.11e-162growth-regulating factor 2-like
SwissprotQ6AWY71e-95GRF2_ORYSJ; Growth-regulating factor 2
TrEMBLA0A1E5WIJ30.0A0A1E5WIJ3_9POAL; Growth-regulating factor 2
STRINGPavir.Da01847.1.p1e-161(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139922527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-40growth-regulating factor 5